Variant report

Variant	rs72923311
Chromosome Location	chr11:59189411-59189412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17153756	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153770	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153772	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153775	0.92[EUR][1000 genomes]
rs17153783	0.92[EUR][1000 genomes]
rs60526256	0.82[EUR][1000 genomes]
rs60580473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61041512	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72923323	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72923328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72923336	1.00[EUR][1000 genomes]
rs72923365	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72923370	0.82[EUR][1000 genomes]
rs7940275	0.82[EUR][1000 genomes]
rs7943256	0.82[EUR][1000 genomes]
rs7943390	0.82[EUR][1000 genomes]
rs9666938	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59186000-59190000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:59187400-59191200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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