Variant report

Variant	rs72923365
Chromosome Location	chr11:59227864-59227865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17153756	0.92[EUR][1000 genomes]
rs17153770	0.92[EUR][1000 genomes]
rs17153772	0.92[EUR][1000 genomes]
rs17153775	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153783	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60526256	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60580473	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61041512	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72923311	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72923323	0.92[EUR][1000 genomes]
rs72923328	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72923336	1.00[EUR][1000 genomes]
rs72923370	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940275	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943256	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943390	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666938	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv975342	chr11:59203908-59237268	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59224200-59229800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:59224400-59230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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