Variant report

Variant	rs72924895
Chromosome Location	chr3:69177339-69177340
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12636843	0.82[EUR][1000 genomes]
rs17005347	1.00[EUR][1000 genomes]
rs17005353	1.00[EUR][1000 genomes]
rs17005356	0.94[EUR][1000 genomes]
rs17005357	0.94[EUR][1000 genomes]
rs3772982	0.94[EUR][1000 genomes]
rs56393216	1.00[EUR][1000 genomes]
rs58716882	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72924884	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72926705	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72926719	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72926727	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72926735	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72926738	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7612705	0.82[EUR][1000 genomes]
rs7617729	1.00[EUR][1000 genomes]
rs9832917	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69175400-69178000	Enhancers	Psoas Muscle	Psoas
2	chr3:69175400-69179200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:69176000-69179000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:69176600-69177800	Weak transcription	Hela-S3	cervix
5	chr3:69177000-69178400	Enhancers	Placenta	Placenta
6	chr3:69177200-69177400	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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