Variant report

Variant	rs72926738
Chromosome Location	chr3:69191823-69191824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4498053	1.00[EUR][1000 genomes]
rs4855358	1.00[EUR][1000 genomes]
rs58716882	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60366116	0.80[AFR][1000 genomes]
rs6781835	1.00[EUR][1000 genomes]
rs72924895	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72926705	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72926719	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72926727	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72926735	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72926743	0.80[AFR][1000 genomes]
rs72930219	1.00[EUR][1000 genomes]
rs9835682	1.00[EUR][1000 genomes]
rs9859412	1.00[EUR][1000 genomes]
rs9883015	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69190400-69194200	Enhancers	Hela-S3	cervix
3	chr3:69190600-69192200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:69191200-69192200	Enhancers	HSMMtube	muscle
5	chr3:69191200-69192600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:69191400-69192000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:69191400-69195000	Enhancers	K562	blood
8	chr3:69191600-69192200	Enhancers	NHLF	lung
9	chr3:69191600-69192400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:69191800-69193000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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