Variant report

Variant	rs9859412
Chromosome Location	chr3:69197792-69197793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11706756	0.81[ASN][1000 genomes]
rs4461426	0.82[AMR][1000 genomes]
rs4498053	1.00[EUR][1000 genomes]
rs4504171	0.82[AMR][1000 genomes]
rs4560302	0.82[AMR][1000 genomes]
rs4563416	0.82[AMR][1000 genomes]
rs4855358	1.00[EUR][1000 genomes]
rs58716882	1.00[EUR][1000 genomes]
rs6781835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792358	0.82[AMR][1000 genomes]
rs72926735	1.00[EUR][1000 genomes]
rs72926738	1.00[EUR][1000 genomes]
rs72930219	1.00[EUR][1000 genomes]
rs9835682	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883017	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69194200-69198800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:69194400-69200600	Weak transcription	Psoas Muscle	Psoas
3	chr3:69197400-69198600	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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