Variant report

Variant	rs4560302
Chromosome Location	chr3:69198887-69198888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69127961..69130121-chr3:69197347..69199042,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144744	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10865644	1.00[ASN][1000 genomes]
rs10865645	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11128114	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719988	0.98[ASN][1000 genomes]
rs17005393	0.96[ASN][1000 genomes]
rs28591428	0.93[ASN][1000 genomes]
rs34890270	0.93[ASN][1000 genomes]
rs4241384	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4241395	0.94[ASN][1000 genomes]
rs4389485	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4407408	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4425262	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4446215	0.83[EUR][1000 genomes]
rs4461426	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4493438	0.83[EUR][1000 genomes]
rs4504171	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508787	0.83[EUR][1000 genomes]
rs4522769	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4563416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4563417	0.97[ASN][1000 genomes]
rs4589943	0.91[ASN][1000 genomes]
rs4621333	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57774890	0.83[EUR][1000 genomes]
rs58181265	0.83[EUR][1000 genomes]
rs58860053	0.83[EUR][1000 genomes]
rs61006449	0.83[EUR][1000 genomes]
rs6779055	0.83[EUR][1000 genomes]
rs6781835	0.82[AMR][1000 genomes]
rs6792358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797538	0.83[EUR][1000 genomes]
rs6799247	0.83[EUR][1000 genomes]
rs6804718	0.83[EUR][1000 genomes]
rs72924889	0.91[ASN][1000 genomes]
rs72924892	0.94[ASN][1000 genomes]
rs72924899	0.83[EUR][1000 genomes]
rs72924901	0.83[EUR][1000 genomes]
rs72926297	1.00[EUR][1000 genomes]
rs72926723	0.83[EUR][1000 genomes]
rs72926734	0.83[EUR][1000 genomes]
rs7635939	0.83[EUR][1000 genomes]
rs7638543	0.83[EUR][1000 genomes]
rs9835682	0.82[AMR][1000 genomes]
rs9853587	0.83[EUR][1000 genomes]
rs9859412	0.82[AMR][1000 genomes]
rs9883015	0.82[AMR][1000 genomes]
rs9883017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69194400-69200600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69198800-69199000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:69198800-69199200	Enhancers	Fetal Heart	heart
4	chr3:69198800-69199200	Enhancers	Skeletal Muscle Male	skeletal muscle

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