Variant report

Variant	rs6779055
Chromosome Location	chr3:69188280-69188281
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69187723..69190468-chr3:69191360..69194154,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1051901	0.81[GIH][hapmap]
rs11128114	0.83[EUR][1000 genomes]
rs11128118	1.00[CEU][hapmap]
rs1131960	0.81[GIH][hapmap]
rs11712024	1.00[CEU][hapmap]
rs12053848	1.00[CEU][hapmap]
rs17005366	0.81[GIH][hapmap]
rs3772980	0.81[GIH][hapmap]
rs3796213	0.81[GIH][hapmap]
rs3796214	0.81[GIH][hapmap]
rs4407408	0.83[EUR][1000 genomes]
rs4425262	0.83[EUR][1000 genomes]
rs4446215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4461426	0.83[EUR][1000 genomes]
rs4504171	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.83[EUR][1000 genomes]
rs4508787	1.00[CEU][hapmap]
rs4522769	0.83[EUR][1000 genomes]
rs4525874	0.96[GIH][hapmap]
rs4541413	1.00[CEU][hapmap]
rs4560302	0.83[EUR][1000 genomes]
rs4563416	0.83[EUR][1000 genomes]
rs4621333	0.83[EUR][1000 genomes]
rs57774890	1.00[EUR][1000 genomes]
rs58181265	1.00[EUR][1000 genomes]
rs58860053	1.00[EUR][1000 genomes]
rs61006449	1.00[EUR][1000 genomes]
rs6549187	1.00[CEU][hapmap]
rs6792358	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.83[EUR][1000 genomes]
rs6797538	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6799247	1.00[EUR][1000 genomes]
rs6804872	1.00[CEU][hapmap]
rs72924899	1.00[EUR][1000 genomes]
rs72924901	1.00[EUR][1000 genomes]
rs72926297	0.83[EUR][1000 genomes]
rs72926723	1.00[EUR][1000 genomes]
rs72926734	1.00[EUR][1000 genomes]
rs7635939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7638543	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs937863	0.92[GIH][hapmap]
rs9838728	1.00[CEU][hapmap]
rs9853587	1.00[CEU][hapmap]
rs9883017	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69180200-69190600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:69187000-69190400	Weak transcription	Hela-S3	cervix

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