Variant report

Variant	rs17005366
Chromosome Location	chr3:69166356-69166357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69166135..69168854-chr3:69169278..69171647,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10489	0.93[GIH][hapmap]
rs1051901	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1131960	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12054346	1.00[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes]
rs2279936	0.81[MKK][hapmap]
rs3772980	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3772983	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3796213	0.81[CHD][hapmap];1.00[GIH][hapmap]
rs3796214	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3821564	1.00[EUR][1000 genomes]
rs4525874	0.81[GIH][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap]
rs56152276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56194306	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56280964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57159802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58277851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59090383	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60474520	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61086164	0.92[ASN][1000 genomes]
rs6549184	0.89[GIH][hapmap]
rs72924853	1.00[EUR][1000 genomes]
rs72924854	1.00[EUR][1000 genomes]
rs73835715	0.88[ASN][1000 genomes]
rs73835716	0.92[ASN][1000 genomes]
rs73835722	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73835726	1.00[EUR][1000 genomes]
rs73835727	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73835728	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73835729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7613159	0.88[YRI][hapmap]
rs7617775	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7621394	1.00[EUR][1000 genomes]
rs7621929	1.00[EUR][1000 genomes]
rs937863	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv876934	chr3:69111512-69166895	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv2762334	chr3:69157085-69173375	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69153800-69168000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:69154000-69167800	Weak transcription	Pancreas	Pancrea
3	chr3:69154000-69170200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:69155800-69170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:69158400-69167200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:69160600-69172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:69163200-69166800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:69163200-69170000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:69163600-69171600	Weak transcription	Fetal Lung	lung
10	chr3:69164200-69166400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:69164400-69167400	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr3:69164600-69166600	Enhancers	HMEC	breast
13	chr3:69164600-69167400	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr3:69164800-69166400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:69164800-69166400	Enhancers	Brain Substantia Nigra	brain
16	chr3:69164800-69166600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:69164800-69166600	Active TSS	Right Atrium	heart
18	chr3:69164800-69166600	Enhancers	NHEK	skin
19	chr3:69165400-69166800	Flanking Active TSS	Fetal Heart	heart
20	chr3:69165400-69167000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:69165400-69167400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:69165800-69166400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:69165800-69166400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:69165800-69166400	Enhancers	Psoas Muscle	Psoas
25	chr3:69166000-69166400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr3:69166000-69166400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:69166000-69166400	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr3:69166000-69166600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:69166000-69167800	Weak transcription	Right Ventricle	heart
30	chr3:69166200-69166400	Enhancers	Fetal Muscle Leg	muscle
31	chr3:69166200-69166400	Enhancers	HSMMtube	muscle
32	chr3:69166200-69167200	Weak transcription	Left Ventricle	heart
33	chr3:69166200-69169800	Weak transcription	HSMM	muscle
34	chr3:69166200-69170400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:69166200-69171200	Weak transcription	Muscle Satellite Cultured Cells	--

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