Variant report

Variant	rs73835726
Chromosome Location	chr3:69156334-69156335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69142493..69145688-chr3:69155509..69158556,4	MCF-7	breast:
2	chr3:69127752..69129663-chr3:69155728..69158177,2	K562	blood:

Variant related genes	Relation type
ENSG00000144744	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10489	0.80[ASN][1000 genomes]
rs1051901	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1131960	1.00[EUR][1000 genomes]
rs12054346	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17005366	1.00[EUR][1000 genomes]
rs3772980	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772983	1.00[EUR][1000 genomes]
rs3796213	1.00[ASN][1000 genomes]
rs3796214	1.00[EUR][1000 genomes]
rs3821564	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152276	1.00[EUR][1000 genomes]
rs56194306	1.00[EUR][1000 genomes]
rs56280964	1.00[EUR][1000 genomes]
rs57159802	1.00[EUR][1000 genomes]
rs58277851	1.00[EUR][1000 genomes]
rs59090383	1.00[EUR][1000 genomes]
rs60230066	0.97[ASN][1000 genomes]
rs60474520	1.00[EUR][1000 genomes]
rs72924853	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72924854	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73835722	1.00[EUR][1000 genomes]
rs73835727	1.00[EUR][1000 genomes]
rs73835728	1.00[EUR][1000 genomes]
rs73835729	1.00[EUR][1000 genomes]
rs7617775	0.86[EUR][1000 genomes]
rs7621394	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621929	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625579	0.80[ASN][1000 genomes]
rs7627893	0.80[ASN][1000 genomes]
rs7629932	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv876934	chr3:69111512-69166895	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69136800-69156400	Weak transcription	Fetal Brain Male	brain
2	chr3:69142000-69160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:69143600-69160200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:69145600-69160200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:69145800-69160200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:69146200-69160200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:69147400-69160200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:69151200-69157800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:69151800-69156400	Weak transcription	Fetal Intestine Small	intestine
10	chr3:69152000-69157000	Weak transcription	Stomach Mucosa	stomach
11	chr3:69152000-69160200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:69152800-69157000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:69153200-69158000	Weak transcription	Psoas Muscle	Psoas
14	chr3:69153600-69160000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:69153800-69156600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:69153800-69160200	Weak transcription	Right Ventricle	heart
17	chr3:69153800-69162400	Weak transcription	HMEC	breast
18	chr3:69153800-69165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:69153800-69168000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr3:69154000-69156800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:69154000-69156800	Weak transcription	Fetal Brain Female	brain
22	chr3:69154000-69156800	Weak transcription	Left Ventricle	heart
23	chr3:69154000-69157000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:69154000-69157400	Weak transcription	Fetal Muscle Leg	muscle
25	chr3:69154000-69157400	Weak transcription	Thymus	Thymus
26	chr3:69154000-69157400	Weak transcription	K562	blood
27	chr3:69154000-69158000	Weak transcription	Brain Anterior Caudate	brain
28	chr3:69154000-69162000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr3:69154000-69162200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:69154000-69163200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:69154000-69164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:69154000-69164800	Weak transcription	Right Atrium	heart
33	chr3:69154000-69164800	Weak transcription	NHEK	skin
34	chr3:69154000-69165000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:69154000-69165800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr3:69154000-69167800	Weak transcription	Pancreas	Pancrea
37	chr3:69154000-69170200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:69154200-69156400	Enhancers	Primary hematopoietic stem cells	blood
39	chr3:69154200-69156800	Weak transcription	Fetal Intestine Large	intestine
40	chr3:69154200-69160200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:69154200-69162000	Weak transcription	Brain Angular Gyrus	brain
42	chr3:69154400-69163000	Weak transcription	Fetal Lung	lung
43	chr3:69154400-69166000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:69154600-69160200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:69154800-69157000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:69154800-69157600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:69155000-69156600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr3:69155200-69156800	Weak transcription	Brain Germinal Matrix	brain
49	chr3:69155200-69158000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:69155200-69158000	Weak transcription	Placenta	Placenta

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