Variant report

Variant	rs7629932
Chromosome Location	chr3:69155774-69155775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69142493..69145688-chr3:69155509..69158556,4	MCF-7	breast:
2	chr3:69127752..69129663-chr3:69155728..69158177,2	K562	blood:

Variant related genes	Relation type
ENSG00000144744	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10489	0.80[ASN][1000 genomes]
rs1051901	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12054346	0.96[ASN][1000 genomes]
rs3772980	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3796213	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821564	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60230066	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72924853	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924854	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73835726	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7621394	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7621929	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7625579	0.80[ASN][1000 genomes]
rs7627893	0.80[ASN][1000 genomes]
rs937863	1.00[CEU][hapmap]
rs9843043	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv876934	chr3:69111512-69166895	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69135800-69155800	Weak transcription	Fetal Kidney	kidney
2	chr3:69136800-69156400	Weak transcription	Fetal Brain Male	brain
3	chr3:69142000-69160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:69143600-69160200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:69145600-69160200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:69145800-69160200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:69146200-69160200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:69147400-69160200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:69148600-69155800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr3:69148800-69155800	Strong transcription	Duodenum Mucosa	Duodenum
11	chr3:69148800-69155800	Strong transcription	Dnd41	blood
12	chr3:69150400-69155800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:69150600-69155800	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr3:69150800-69155800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:69150800-69155800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:69151000-69155800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:69151200-69157800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:69151800-69155800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:69151800-69155800	Weak transcription	HepG2	liver
20	chr3:69151800-69156400	Weak transcription	Fetal Intestine Small	intestine
21	chr3:69152000-69157000	Weak transcription	Stomach Mucosa	stomach
22	chr3:69152000-69160200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:69152800-69157000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:69153200-69155800	Genic enhancers	Primary monocytes fromperipheralblood	blood
25	chr3:69153200-69155800	Genic enhancers	Brain Hippocampus Middle	brain
26	chr3:69153200-69158000	Weak transcription	Psoas Muscle	Psoas
27	chr3:69153600-69155800	Genic enhancers	HSMM	muscle
28	chr3:69153600-69155800	Strong transcription	HUVEC	blood vessel
29	chr3:69153600-69155800	Genic enhancers	Osteobl	bone
30	chr3:69153600-69156000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:69153600-69160000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:69153800-69155800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:69153800-69156600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr3:69153800-69160200	Weak transcription	Right Ventricle	heart
35	chr3:69153800-69162400	Weak transcription	HMEC	breast
36	chr3:69153800-69165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:69153800-69168000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr3:69154000-69155800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:69154000-69156200	Weak transcription	Esophagus	oesophagus
40	chr3:69154000-69156800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:69154000-69156800	Weak transcription	Fetal Brain Female	brain
42	chr3:69154000-69156800	Weak transcription	Left Ventricle	heart
43	chr3:69154000-69157000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr3:69154000-69157400	Weak transcription	Fetal Muscle Leg	muscle
45	chr3:69154000-69157400	Weak transcription	Thymus	Thymus
46	chr3:69154000-69157400	Weak transcription	K562	blood
47	chr3:69154000-69158000	Weak transcription	Brain Anterior Caudate	brain
48	chr3:69154000-69162000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr3:69154000-69162200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:69154000-69163200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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