Variant report

Variant	rs7627893
Chromosome Location	chr3:69152367-69152368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69142415..69145222-chr3:69150307..69152771,2	K562	blood:
2	chr3:69133360..69135873-chr3:69150773..69153326,2	K562	blood:
3	chr3:69151962..69153673-chr3:69157570..69159178,2	K562	blood:

Variant related genes	Relation type
ENSG00000144746	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10489	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1051901	0.80[ASN][1000 genomes]
rs3772980	0.80[ASN][1000 genomes]
rs3796213	0.80[ASN][1000 genomes]
rs3821564	0.80[ASN][1000 genomes]
rs6549184	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72924853	0.80[ASN][1000 genomes]
rs72924854	0.80[ASN][1000 genomes]
rs73835726	0.80[ASN][1000 genomes]
rs7614224	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7621394	0.80[ASN][1000 genomes]
rs7621929	0.80[ASN][1000 genomes]
rs7625579	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629932	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv876934	chr3:69111512-69166895	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69135200-69155200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:69135800-69155800	Weak transcription	Fetal Kidney	kidney
3	chr3:69136800-69156400	Weak transcription	Fetal Brain Male	brain
4	chr3:69139800-69154600	Weak transcription	A549	lung
5	chr3:69141600-69152400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:69142000-69160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:69142200-69153400	Weak transcription	Fetal Brain Female	brain
8	chr3:69143600-69152600	Weak transcription	Ovary	ovary
9	chr3:69143600-69152800	Weak transcription	Brain Germinal Matrix	brain
10	chr3:69143600-69160200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:69144200-69153000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:69145600-69153600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:69145600-69160200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:69145800-69153400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:69145800-69160200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:69146200-69160200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:69147400-69160200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:69147800-69152800	Weak transcription	Psoas Muscle	Psoas
19	chr3:69147800-69153600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:69148000-69153800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
21	chr3:69148600-69153800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:69148600-69155200	Strong transcription	Primary B cells from cord blood	blood
23	chr3:69148600-69155800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr3:69148800-69153400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:69148800-69153400	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr3:69148800-69153800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr3:69148800-69154000	Strong transcription	Fetal Muscle Leg	muscle
28	chr3:69148800-69155600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr3:69148800-69155600	Strong transcription	GM12878-XiMat	blood
30	chr3:69148800-69155800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr3:69148800-69155800	Strong transcription	Dnd41	blood
32	chr3:69149000-69153200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:69149000-69154800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:69149200-69152600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:69149200-69152800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:69149200-69154200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr3:69149200-69155400	Strong transcription	Fetal Thymus	thymus
38	chr3:69149600-69154000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:69149800-69153200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr3:69150000-69155400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr3:69150200-69153400	Weak transcription	Lung	lung
42	chr3:69150200-69154800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:69150200-69155400	Strong transcription	NH-A	brain
44	chr3:69150400-69152600	Strong transcription	Primary T cells from cord blood	blood
45	chr3:69150400-69154000	Strong transcription	HSMMtube	muscle
46	chr3:69150400-69155800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:69150600-69154000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:69150600-69154000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:69150600-69154000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:69150600-69154000	Genic enhancers	Skeletal Muscle Female	skeletal muscle

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