Variant report

Variant	rs4525874
Chromosome Location	chr3:69197709-69197710
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69127961..69130121-chr3:69197347..69199042,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144744	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1051901	0.81[GIH][hapmap];1.00[MEX][hapmap]
rs1131960	0.81[GIH][hapmap];1.00[MEX][hapmap]
rs11706756	0.89[ASN][1000 genomes]
rs17005366	0.81[GIH][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap]
rs17005397	0.99[ASN][1000 genomes]
rs34550101	0.99[ASN][1000 genomes]
rs3772980	0.81[GIH][hapmap];1.00[MEX][hapmap]
rs3796213	0.81[GIH][hapmap]
rs3796214	0.81[GIH][hapmap];1.00[MEX][hapmap]
rs4350924	0.82[YRI][hapmap]
rs4504171	0.96[GIH][hapmap]
rs4855355	0.99[ASN][1000 genomes]
rs4855357	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4855363	0.82[YRI][hapmap]
rs4855548	0.97[ASN][1000 genomes]
rs4855549	0.96[ASN][1000 genomes]
rs4855550	0.97[ASN][1000 genomes]
rs5017791	0.88[ASN][1000 genomes]
rs5017792	0.88[ASN][1000 genomes]
rs55978846	0.99[ASN][1000 genomes]
rs58798960	0.99[ASN][1000 genomes]
rs60204248	0.99[ASN][1000 genomes]
rs61207882	0.99[ASN][1000 genomes]
rs6762052	0.98[ASN][1000 genomes]
rs6763046	0.81[GIH][hapmap]
rs6767493	0.81[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6776230	0.82[YRI][hapmap]
rs6778830	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6779171	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6792358	0.96[GIH][hapmap]
rs6806271	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6808756	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7613159	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs7638997	0.97[ASN][1000 genomes]
rs881804	0.97[ASN][1000 genomes]
rs937863	0.90[CHB][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9815992	0.96[ASN][1000 genomes]
rs9825485	0.98[ASN][1000 genomes]
rs9843043	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9849435	0.82[YRI][hapmap]
rs9853232	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9864756	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69194200-69198800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:69194400-69200600	Weak transcription	Psoas Muscle	Psoas
3	chr3:69197400-69198600	Enhancers	Skeletal Muscle Female	skeletal muscle

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