Variant report

Variant	rs881804
Chromosome Location	chr3:69170587-69170588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69170148..69170801-chr3:69474154..69475018,3	MCF-7	breast:
2	chr3:69169765..69171080-chr3:69719979..69720844,3	K562	blood:
3	chr3:69170217..69171049-chr3:69476133..69476677,2	MCF-7	breast:
4	chr3:69170144..69170652-chr3:69355252..69355843,2	MCF-7	breast:
5	chr3:69170350..69171021-chr3:69355165..69356027,2	MCF-7	breast:
6	chr3:69166135..69168854-chr3:69169278..69171647,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11706756	0.86[ASN][1000 genomes]
rs17005397	0.96[ASN][1000 genomes]
rs34550101	0.96[ASN][1000 genomes]
rs4525874	0.97[ASN][1000 genomes]
rs4855355	0.96[ASN][1000 genomes]
rs4855357	0.83[ASN][1000 genomes]
rs4855548	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4855549	0.93[ASN][1000 genomes]
rs4855550	0.94[ASN][1000 genomes]
rs5017791	0.89[ASN][1000 genomes]
rs5017792	0.89[ASN][1000 genomes]
rs55978846	0.96[ASN][1000 genomes]
rs58798960	0.96[ASN][1000 genomes]
rs60204248	0.96[ASN][1000 genomes]
rs61207882	0.96[ASN][1000 genomes]
rs6762052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6767493	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6778830	0.95[ASN][1000 genomes]
rs6779171	0.96[ASN][1000 genomes]
rs6806271	0.81[ASN][1000 genomes]
rs6808756	0.81[ASN][1000 genomes]
rs7613159	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7638997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs937863	1.00[ASN][1000 genomes]
rs9815992	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9825485	0.99[ASN][1000 genomes]
rs9843043	0.99[ASN][1000 genomes]
rs9853232	0.82[ASN][1000 genomes]
rs9864756	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2762334	chr3:69157085-69173375	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69160600-69172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:69163600-69171600	Weak transcription	Fetal Lung	lung
3	chr3:69166200-69171200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:69166400-69171200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:69169000-69172000	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr3:69169000-69172000	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr3:69169800-69170800	Active TSS	Fetal Muscle Leg	muscle
8	chr3:69169800-69171200	Active TSS	HSMM	muscle
9	chr3:69169800-69171600	Active TSS	Fetal Heart	heart
10	chr3:69169800-69171800	Active TSS	Fetal Muscle Trunk	muscle
11	chr3:69169800-69171800	Active TSS	Right Atrium	heart
12	chr3:69169800-69171800	Active TSS	Right Ventricle	heart
13	chr3:69169800-69171800	Active TSS	HSMMtube	muscle
14	chr3:69169800-69172200	Active TSS	Left Ventricle	heart
15	chr3:69169800-69172200	Active TSS	Psoas Muscle	Psoas
16	chr3:69170000-69170600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:69170000-69170600	Enhancers	Brain Angular Gyrus	brain
18	chr3:69170000-69170800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:69170000-69171000	Enhancers	Hela-S3	cervix
20	chr3:69170200-69170600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:69170200-69170800	Enhancers	Brain Hippocampus Middle	brain
22	chr3:69170200-69171000	Enhancers	Adipose Nuclei	Adipose
23	chr3:69170200-69171200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr3:69170200-69171200	Enhancers	HUVEC	blood vessel
25	chr3:69170200-69171400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr3:69170200-69171800	Active TSS	Stomach Smooth Muscle	stomach
27	chr3:69170400-69170600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:69170400-69170600	Enhancers	Brain Anterior Caudate	brain
29	chr3:69170400-69170600	Enhancers	Brain Cingulate Gyrus	brain
30	chr3:69170400-69171200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:69170400-69171200	Weak transcription	Brain Substantia Nigra	brain
32	chr3:69170400-69171200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr3:69170400-69171600	Enhancers	NHLF	lung

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