Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:69211406..69213651-chr3:69358510..69360667,2	MCF-7	breast:
2	chr3:69210554..69213653-chr3:69354027..69357404,3	MCF-7	breast:
3	chr3:69210856..69211455-chr3:69474132..69475091,2	K562	blood:
4	chr3:69210548..69211482-chr3:69355203..69356159,9	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17005397	0.84[ASN][1000 genomes]
rs34550101	0.84[ASN][1000 genomes]
rs4282065	1.00[EUR][1000 genomes]
rs4428184	1.00[EUR][1000 genomes]
rs4525874	0.88[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4855355	0.84[ASN][1000 genomes]
rs4855357	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4855548	0.82[ASN][1000 genomes]
rs4855549	0.81[ASN][1000 genomes]
rs4855550	0.82[ASN][1000 genomes]
rs55978846	0.84[ASN][1000 genomes]
rs58798960	0.84[ASN][1000 genomes]
rs60204248	0.84[ASN][1000 genomes]
rs61207882	0.84[ASN][1000 genomes]
rs6762052	0.83[ASN][1000 genomes]
rs6763046	1.00[EUR][1000 genomes]
rs6765197	1.00[EUR][1000 genomes]
rs6767493	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs6778830	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6779171	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6806271	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6808756	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72928304	1.00[EUR][1000 genomes]
rs72928308	1.00[EUR][1000 genomes]
rs7609655	1.00[EUR][1000 genomes]
rs7613159	0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs7638997	0.82[ASN][1000 genomes]
rs881804	0.82[ASN][1000 genomes]
rs9310139	1.00[EUR][1000 genomes]
rs937863	0.88[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs9815992	0.81[ASN][1000 genomes]
rs9825485	0.83[ASN][1000 genomes]
rs9843043	0.89[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9864756	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69209600-69228000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:69210800-69211600	Enhancers	Brain Hippocampus Middle	brain
3	chr3:69211000-69211600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:69211000-69211600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:69211000-69211600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:69211000-69211600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:69211000-69211600	Enhancers	Brain Substantia Nigra	brain
8	chr3:69211000-69212200	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:69211200-69218800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:69211200-69219600	Weak transcription	Fetal Lung	lung
11	chr3:69211200-69219800	Weak transcription	Fetal Brain Female	brain
12	chr3:69211200-69219800	Weak transcription	Dnd41	blood
13	chr3:69211200-69226600	Weak transcription	Fetal Kidney	kidney
14	chr3:69211200-69229400	Weak transcription	Fetal Brain Male	brain

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