Variant report

Variant	rs9815992
Chromosome Location	chr3:69168864-69168865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69127959..69129678-chr3:69167130..69169687,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144744	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11706756	0.85[ASN][1000 genomes]
rs17005397	0.95[ASN][1000 genomes]
rs34550101	0.95[ASN][1000 genomes]
rs4525874	0.96[ASN][1000 genomes]
rs4855355	0.95[ASN][1000 genomes]
rs4855357	0.82[ASN][1000 genomes]
rs4855548	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4855549	0.92[ASN][1000 genomes]
rs4855550	0.93[ASN][1000 genomes]
rs5017791	0.88[ASN][1000 genomes]
rs5017792	0.88[ASN][1000 genomes]
rs55978846	0.95[ASN][1000 genomes]
rs58798960	0.95[ASN][1000 genomes]
rs60204248	0.95[ASN][1000 genomes]
rs61207882	0.95[ASN][1000 genomes]
rs6762052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6767493	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6778830	0.94[ASN][1000 genomes]
rs6779171	0.95[ASN][1000 genomes]
rs6806271	0.80[ASN][1000 genomes]
rs6808756	0.80[ASN][1000 genomes]
rs7613159	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7638997	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs881804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs937863	0.99[ASN][1000 genomes]
rs9825485	0.98[ASN][1000 genomes]
rs9843043	0.98[ASN][1000 genomes]
rs9853232	0.81[ASN][1000 genomes]
rs9864756	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2762334	chr3:69157085-69173375	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69154000-69170200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:69155800-69170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:69160600-69172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:69163200-69170000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:69163600-69171600	Weak transcription	Fetal Lung	lung
6	chr3:69166200-69169800	Weak transcription	HSMM	muscle
7	chr3:69166200-69170400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:69166200-69171200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:69166400-69169800	Weak transcription	HSMMtube	muscle
10	chr3:69166400-69170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:69166400-69171200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:69167400-69169000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
13	chr3:69167400-69169000	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
14	chr3:69167400-69170000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:69167400-69170200	Weak transcription	Brain Anterior Caudate	brain
16	chr3:69167600-69170000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:69167800-69170200	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:69168400-69169800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:69168400-69169800	Weak transcription	Psoas Muscle	Psoas
20	chr3:69168600-69169800	Weak transcription	Right Ventricle	heart
21	chr3:69168800-69169200	Active TSS	Fetal Heart	heart
22	chr3:69168800-69169800	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:69168800-69169800	Weak transcription	Left Ventricle	heart

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