Variant report

Variant	rs4855550
Chromosome Location	chr3:69185740-69185741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69183723..69185886-chr3:69189955..69191851,2	K562	blood:
2	chr3:69159513..69161192-chr3:69185013..69186564,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11706756	0.88[ASN][1000 genomes]
rs17005397	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2872690	0.81[JPT][hapmap];0.91[MEX][hapmap]
rs34550101	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34890270	0.82[EUR][1000 genomes]
rs4525874	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4855355	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4855357	0.85[ASN][1000 genomes]
rs4855548	0.94[ASN][1000 genomes]
rs4855549	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5017791	0.85[ASN][1000 genomes]
rs5017792	0.85[ASN][1000 genomes]
rs55978846	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs58798960	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs60204248	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs61207882	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6762052	0.95[ASN][1000 genomes]
rs6767493	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6778830	0.97[ASN][1000 genomes]
rs6779171	0.98[ASN][1000 genomes]
rs6806271	0.81[ASN][1000 genomes]
rs6808756	0.81[ASN][1000 genomes]
rs7610262	1.00[MEX][hapmap]
rs7613159	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7638997	0.94[ASN][1000 genomes]
rs881804	0.94[ASN][1000 genomes]
rs937863	0.80[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9815992	0.93[ASN][1000 genomes]
rs9825485	0.95[ASN][1000 genomes]
rs9843043	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[ASN][1000 genomes]
rs9853232	0.82[ASN][1000 genomes]
rs9864756	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4855550	LMOD3	cis	Esophagus Muscularis	GTEx
rs4855550	LMOD3	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69180200-69190600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:69185600-69187000	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links