Variant report

Variant	rs7610262
Chromosome Location	chr3:69169466-69169467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69127959..69129678-chr3:69167130..69169687,2	MCF-7	breast:
2	chr3:69166135..69168854-chr3:69169278..69171647,2	K562	blood:

Variant related genes	Relation type
ENSG00000144744	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17005384	0.88[EUR][1000 genomes]
rs1995665	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2872690	1.00[ASW][hapmap];0.80[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3968927	0.92[EUR][1000 genomes]
rs62255473	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7620430	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9844987	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2762334	chr3:69157085-69173375	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7610262	LMOD3	cis	Esophagus Muscularis	GTEx
rs7610262	LMOD3	cis	Artery Tibial	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69154000-69170200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:69155800-69170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:69160600-69172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:69163200-69170000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:69163600-69171600	Weak transcription	Fetal Lung	lung
6	chr3:69166200-69169800	Weak transcription	HSMM	muscle
7	chr3:69166200-69170400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:69166200-69171200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:69166400-69169800	Weak transcription	HSMMtube	muscle
10	chr3:69166400-69170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:69166400-69171200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:69167400-69170000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:69167400-69170200	Weak transcription	Brain Anterior Caudate	brain
14	chr3:69167600-69170000	Weak transcription	Brain Substantia Nigra	brain
15	chr3:69167800-69170200	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:69168400-69169800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:69168400-69169800	Weak transcription	Psoas Muscle	Psoas
18	chr3:69168600-69169800	Weak transcription	Right Ventricle	heart
19	chr3:69168800-69169800	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:69168800-69169800	Weak transcription	Left Ventricle	heart
21	chr3:69169000-69172000	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr3:69169000-69172000	Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr3:69169200-69169800	Weak transcription	Fetal Heart	heart

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