Variant report

Variant	rs3968927
Chromosome Location	chr3:69183404-69183405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12632068	0.82[JPT][hapmap]
rs17005384	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866263	0.82[JPT][hapmap]
rs1995665	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2872690	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs62255473	0.92[EUR][1000 genomes]
rs7610262	0.93[CEU][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs7620430	0.88[EUR][1000 genomes]
rs7631719	0.82[JPT][hapmap]
rs9812253	0.82[JPT][hapmap]
rs9844987	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9855731	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3968927	LMOD3	cis	Artery Tibial	GTEx
rs3968927	LMOD3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69180200-69190600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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