Variant report

Variant	rs73835715
Chromosome Location	chr3:69135799-69135800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69099731..69103494-chr3:69131306..69136379,6	MCF-7	breast:
2	chr3:69128084..69131909-chr3:69132505..69136999,7	K562	blood:
3	chr3:69127777..69131218-chr3:69132524..69136559,5	K562	blood:
4	chr3:69135075..69137300-chr3:69139396..69142710,3	MCF-7	breast:
5	chr3:69134734..69136493-chr3:69152405..69154710,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144744	Chromatin interaction
ENSG00000144747	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1131960	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17005366	0.88[ASN][1000 genomes]
rs3772983	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3796214	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs56152276	0.93[ASN][1000 genomes]
rs56194306	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs56280964	0.94[ASN][1000 genomes]
rs57159802	0.88[ASN][1000 genomes]
rs58277851	0.90[ASN][1000 genomes]
rs59090383	0.94[ASN][1000 genomes]
rs60474520	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61086164	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73835716	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73835722	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73835727	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73835728	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73835729	0.90[ASN][1000 genomes]
rs7617775	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv876934	chr3:69111512-69166895	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69132800-69136200	Active TSS	Psoas Muscle	Psoas
2	chr3:69133200-69137400	Active TSS	Right Atrium	heart
3	chr3:69133400-69136200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:69133600-69136000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:69133600-69136000	Active TSS	Ovary	ovary
6	chr3:69133600-69136200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr3:69133600-69136200	Active TSS	NHLF	lung
8	chr3:69133600-69136400	Active TSS	Esophagus	oesophagus
9	chr3:69133600-69136600	Active TSS	Left Ventricle	heart
10	chr3:69133600-69137400	Active TSS	Aorta	Aorta
11	chr3:69133600-69137800	Active TSS	Right Ventricle	heart
12	chr3:69133800-69136200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr3:69133800-69136400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:69133800-69136400	Active TSS	A549	lung
15	chr3:69133800-69136600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:69133800-69136600	Active TSS	Brain Cingulate Gyrus	brain
17	chr3:69134000-69135800	Active TSS	Fetal Kidney	kidney
18	chr3:69134000-69135800	Active TSS	Gastric	stomach
19	chr3:69134000-69136000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr3:69134000-69136000	Active TSS	Small Intestine	intestine
21	chr3:69134000-69136200	Active TSS	Primary T cells from cord blood	blood
22	chr3:69134000-69136200	Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr3:69134000-69136200	Active TSS	Brain Angular Gyrus	brain
24	chr3:69134000-69136200	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr3:69134000-69136200	Active TSS	Brain Substantia Nigra	brain
26	chr3:69134000-69136200	Active TSS	Colon Smooth Muscle	Colon
27	chr3:69134000-69136200	Active TSS	Rectal Smooth Muscle	rectum
28	chr3:69134000-69136200	Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr3:69134000-69136200	Active TSS	NHDF-Ad	bronchial
30	chr3:69134000-69136400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:69134000-69136400	Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr3:69134000-69136600	Active TSS	Sigmoid Colon	Sigmoid Colon
33	chr3:69134000-69136600	Active TSS	Hela-S3	cervix
34	chr3:69134000-69137400	Active TSS	GM12878-XiMat	blood
35	chr3:69134200-69135800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:69134400-69136200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:69134600-69136200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr3:69134600-69137400	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr3:69134800-69135800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:69134800-69135800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr3:69134800-69135800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr3:69134800-69135800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr3:69134800-69135800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr3:69134800-69135800	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr3:69134800-69135800	Flanking Active TSS	Liver	Liver
46	chr3:69134800-69135800	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr3:69134800-69135800	Flanking Active TSS	HUVEC	blood vessel
48	chr3:69134800-69136000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr3:69134800-69136000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr3:69134800-69136200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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