Variant report

Variant	rs72924901
Chromosome Location	chr3:69181394-69181395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11128114	0.83[EUR][1000 genomes]
rs4407408	0.83[EUR][1000 genomes]
rs4425262	0.83[EUR][1000 genomes]
rs4446215	1.00[EUR][1000 genomes]
rs4461426	0.83[EUR][1000 genomes]
rs4504171	0.83[EUR][1000 genomes]
rs4522769	0.83[EUR][1000 genomes]
rs4560302	0.83[EUR][1000 genomes]
rs4563416	0.83[EUR][1000 genomes]
rs4621333	0.83[EUR][1000 genomes]
rs57774890	1.00[EUR][1000 genomes]
rs58181265	1.00[EUR][1000 genomes]
rs58860053	1.00[EUR][1000 genomes]
rs61006449	1.00[EUR][1000 genomes]
rs6779055	1.00[EUR][1000 genomes]
rs6792358	0.83[EUR][1000 genomes]
rs6797538	1.00[EUR][1000 genomes]
rs6799247	1.00[EUR][1000 genomes]
rs72924899	1.00[EUR][1000 genomes]
rs72926297	0.83[EUR][1000 genomes]
rs72926723	1.00[EUR][1000 genomes]
rs72926734	1.00[EUR][1000 genomes]
rs7635939	1.00[EUR][1000 genomes]
rs7638543	1.00[EUR][1000 genomes]
rs9883017	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3463382	chr3:69179577-69181639	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
4	esv3463383	chr3:69179577-69181639	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	esv19992	chr3:69179922-69181540	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	esv1819006	chr3:69179942-69181552	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
7	esv1820751	chr3:69179942-69181552	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	esv1821491	chr3:69179942-69181552	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	esv1822035	chr3:69179942-69181552	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
10	nsv822132	chr3:69180489-69181444	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69180200-69190600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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