Variant report

Variant	rs4446215
Chromosome Location	chr3:69194600-69194601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11128114	0.83[EUR][1000 genomes]
rs11128118	1.00[CEU][hapmap]
rs11712024	1.00[CEU][hapmap]
rs11719988	0.80[ASN][1000 genomes]
rs12053848	1.00[CEU][hapmap]
rs12637416	0.82[GIH][hapmap]
rs4407408	0.83[EUR][1000 genomes]
rs4425262	0.83[EUR][1000 genomes]
rs4461426	0.83[EUR][1000 genomes]
rs4504171	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.83[EUR][1000 genomes]
rs4508787	1.00[CEU][hapmap]
rs4522769	0.83[EUR][1000 genomes]
rs4525874	0.96[GIH][hapmap]
rs4541413	1.00[CEU][hapmap]
rs4560302	0.83[EUR][1000 genomes]
rs4563416	0.83[EUR][1000 genomes]
rs4621333	0.83[EUR][1000 genomes]
rs57774890	1.00[EUR][1000 genomes]
rs58181265	1.00[EUR][1000 genomes]
rs58860053	1.00[EUR][1000 genomes]
rs61006449	1.00[EUR][1000 genomes]
rs6549187	1.00[CEU][hapmap]
rs6779055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792358	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.83[EUR][1000 genomes]
rs6797538	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799247	1.00[EUR][1000 genomes]
rs6804872	1.00[CEU][hapmap]
rs72924899	1.00[EUR][1000 genomes]
rs72924901	1.00[EUR][1000 genomes]
rs72926297	0.83[EUR][1000 genomes]
rs72926723	1.00[EUR][1000 genomes]
rs72926734	1.00[EUR][1000 genomes]
rs7635939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937863	0.93[GIH][hapmap]
rs9838728	1.00[CEU][hapmap]
rs9853587	1.00[CEU][hapmap]
rs9883017	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69191400-69195000	Enhancers	K562	blood
2	chr3:69193200-69194600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr3:69193400-69194600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr3:69193400-69195200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:69193400-69195200	Enhancers	Placenta	Placenta
6	chr3:69193600-69194600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr3:69193600-69195200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:69193800-69194600	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:69193800-69194600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:69193800-69194600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:69193800-69194600	Enhancers	Fetal Thymus	thymus
12	chr3:69193800-69194600	Enhancers	Dnd41	blood
13	chr3:69193800-69194800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:69193800-69195000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr3:69193800-69195000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:69193800-69195000	Enhancers	Brain Substantia Nigra	brain
17	chr3:69193800-69195200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:69194000-69195000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:69194000-69195200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:69194200-69194600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:69194200-69198800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:69194400-69194800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:69194400-69195000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:69194400-69200600	Weak transcription	Psoas Muscle	Psoas

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