Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11128114	0.83[EUR][1000 genomes]
rs4407408	0.83[EUR][1000 genomes]
rs4425262	0.83[EUR][1000 genomes]
rs4446215	1.00[EUR][1000 genomes]
rs4461426	0.83[EUR][1000 genomes]
rs4504171	0.83[EUR][1000 genomes]
rs4522769	0.83[EUR][1000 genomes]
rs4560302	0.83[EUR][1000 genomes]
rs4563416	0.83[EUR][1000 genomes]
rs4621333	0.83[EUR][1000 genomes]
rs57774890	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58181265	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58860053	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61006449	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6779055	1.00[EUR][1000 genomes]
rs6792358	0.83[EUR][1000 genomes]
rs6797538	1.00[EUR][1000 genomes]
rs6799247	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72924901	1.00[EUR][1000 genomes]
rs72926297	0.83[EUR][1000 genomes]
rs72926723	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72926734	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7635939	1.00[EUR][1000 genomes]
rs7638543	1.00[EUR][1000 genomes]
rs9883017	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69175400-69179200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr3:69176000-69179000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
4	chr3:69178200-69179000	Enhancers	Fetal Lung	lung
5	chr3:69178400-69179000	Enhancers	HSMM	muscle
6	chr3:69178400-69179200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:69178400-69180000	Weak transcription	Placenta	Placenta
8	chr3:69178600-69179000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:69178800-69179200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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