Variant report
Variant | rs61006449 |
---|---|
Chromosome Location | chr3:69184624-69184625 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:69183723..69185886-chr3:69189955..69191851,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11128114 | 0.83[EUR][1000 genomes] |
rs4407408 | 0.83[EUR][1000 genomes] |
rs4425262 | 0.83[EUR][1000 genomes] |
rs4446215 | 1.00[EUR][1000 genomes] |
rs4461426 | 0.83[EUR][1000 genomes] |
rs4504171 | 0.83[EUR][1000 genomes] |
rs4522769 | 0.83[EUR][1000 genomes] |
rs4560302 | 0.83[EUR][1000 genomes] |
rs4563416 | 0.83[EUR][1000 genomes] |
rs4621333 | 0.83[EUR][1000 genomes] |
rs57774890 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs58181265 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58860053 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6779055 | 1.00[EUR][1000 genomes] |
rs6792358 | 0.83[EUR][1000 genomes] |
rs6797538 | 1.00[EUR][1000 genomes] |
rs6799247 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72924899 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs72924901 | 1.00[EUR][1000 genomes] |
rs72926297 | 0.83[EUR][1000 genomes] |
rs72926723 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72926734 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7635939 | 1.00[EUR][1000 genomes] |
rs7638543 | 1.00[EUR][1000 genomes] |
rs9883017 | 0.83[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv876933 | chr3:69059023-69227379 | Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
2 | nsv521439 | chr3:69171803-69185740 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:69178000-69193600 | Weak transcription | Psoas Muscle | Psoas |
2 | chr3:69180200-69190600 | Weak transcription | Skeletal Muscle Female | skeletal muscle |