Variant report

Variant	rs4407408
Chromosome Location	chr3:69191221-69191222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69183723..69185886-chr3:69189955..69191851,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10865644	0.94[ASN][1000 genomes]
rs10865645	0.94[ASN][1000 genomes]
rs11128114	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11128118	1.00[CEU][hapmap]
rs11712024	1.00[CEU][hapmap]
rs11719988	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12053848	1.00[CEU][hapmap]
rs17005393	0.92[ASN][1000 genomes]
rs28591428	0.94[ASN][1000 genomes]
rs34890270	0.94[ASN][1000 genomes]
rs4241384	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4241395	0.88[ASN][1000 genomes]
rs4389485	0.96[ASN][1000 genomes]
rs4425262	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4446215	0.83[EUR][1000 genomes]
rs4461426	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4493438	0.83[EUR][1000 genomes]
rs4504171	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4508787	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4522769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4541413	1.00[CEU][hapmap]
rs4560302	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4563416	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4563417	0.92[ASN][1000 genomes]
rs4589943	0.85[ASN][1000 genomes]
rs4621333	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57774890	0.83[EUR][1000 genomes]
rs58181265	0.83[EUR][1000 genomes]
rs58860053	0.83[EUR][1000 genomes]
rs61006449	0.83[EUR][1000 genomes]
rs6549187	1.00[CEU][hapmap]
rs6779055	0.83[EUR][1000 genomes]
rs6792358	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6797538	0.83[EUR][1000 genomes]
rs6799247	0.83[EUR][1000 genomes]
rs6804718	0.83[EUR][1000 genomes]
rs6804872	1.00[CEU][hapmap]
rs72924889	0.86[ASN][1000 genomes]
rs72924892	0.88[ASN][1000 genomes]
rs72924899	0.83[EUR][1000 genomes]
rs72924901	0.83[EUR][1000 genomes]
rs72926297	1.00[EUR][1000 genomes]
rs72926723	0.83[EUR][1000 genomes]
rs72926734	0.83[EUR][1000 genomes]
rs7635939	0.83[EUR][1000 genomes]
rs7638543	0.83[EUR][1000 genomes]
rs9838728	1.00[CEU][hapmap]
rs9853587	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9883017	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69190400-69194200	Enhancers	Hela-S3	cervix
3	chr3:69190600-69192200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:69191200-69191600	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:69191200-69191600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr3:69191200-69192200	Enhancers	HSMMtube	muscle
7	chr3:69191200-69192600	Enhancers	Muscle Satellite Cultured Cells	--

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