Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10865644	0.94[ASN][1000 genomes]
rs10865645	0.94[ASN][1000 genomes]
rs11128114	0.94[ASN][1000 genomes]
rs11719988	0.92[ASN][1000 genomes]
rs17005393	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28591428	0.93[ASN][1000 genomes]
rs34890270	0.93[ASN][1000 genomes]
rs4241384	0.92[ASN][1000 genomes]
rs4389485	0.91[ASN][1000 genomes]
rs4407408	0.88[ASN][1000 genomes]
rs4425262	0.94[ASN][1000 genomes]
rs4461426	0.94[ASN][1000 genomes]
rs4504171	0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4522769	0.94[ASN][1000 genomes]
rs4525874	0.90[GIH][hapmap]
rs4560302	0.94[ASN][1000 genomes]
rs4563416	0.94[ASN][1000 genomes]
rs4563417	0.91[ASN][1000 genomes]
rs4589943	0.85[ASN][1000 genomes]
rs4621333	0.94[ASN][1000 genomes]
rs6792358	0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs72924889	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72924892	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937863	0.93[GIH][hapmap]
rs9883017	0.92[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4241395	IGFBP3	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69175400-69178000	Enhancers	Psoas Muscle	Psoas
2	chr3:69175400-69179200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:69176000-69179000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:69177000-69178400	Enhancers	Placenta	Placenta
5	chr3:69177800-69178600	Enhancers	NHLF	lung
6	chr3:69177800-69178800	Enhancers	Hela-S3	cervix

Quick Search: