Variant report
| Variant | rs10865645 |
|---|---|
| Chromosome Location | chr3:69200511-69200512 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10865644 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11128114 | 1.00[ASN][1000 genomes] |
| rs11719988 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17005393 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28591428 | 0.93[ASN][1000 genomes] |
| rs34890270 | 0.93[ASN][1000 genomes] |
| rs4241384 | 0.98[ASN][1000 genomes] |
| rs4241395 | 0.94[ASN][1000 genomes] |
| rs4389485 | 0.95[ASN][1000 genomes] |
| rs4407408 | 0.94[ASN][1000 genomes] |
| rs4425262 | 0.98[ASN][1000 genomes] |
| rs4461426 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4504171 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4522769 | 1.00[ASN][1000 genomes] |
| rs4560302 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4563416 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4563417 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4589943 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4621333 | 1.00[ASN][1000 genomes] |
| rs6792358 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72924889 | 0.91[ASN][1000 genomes] |
| rs72924892 | 0.94[ASN][1000 genomes] |
| rs9883017 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876933 | chr3:69059023-69227379 | Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10865645 | AMPD3 | trans | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:69194400-69200600 | Weak transcription | Psoas Muscle | Psoas |
