Variant report

Variant	rs6804872
Chromosome Location	chr3:69229111-69229112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11128118	1.00[CEU][hapmap]
rs11706465	1.00[MEX][hapmap]
rs11712024	1.00[CEU][hapmap]
rs12053848	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12172931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34263064	0.84[ASN][1000 genomes]
rs35461234	0.84[ASN][1000 genomes]
rs4075188	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4504171	1.00[CEU][hapmap]
rs4508787	1.00[CEU][hapmap]
rs4541413	1.00[CEU][hapmap]
rs4855299	1.00[EUR][1000 genomes]
rs6549187	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs67268350	1.00[EUR][1000 genomes]
rs6772387	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6776027	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6776243	0.92[ASN][1000 genomes]
rs6781505	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6781739	0.92[ASN][1000 genomes]
rs6782869	0.84[ASN][1000 genomes]
rs6784841	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6785253	0.92[ASN][1000 genomes]
rs6792358	1.00[CEU][hapmap]
rs6806528	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs73835777	1.00[EUR][1000 genomes]
rs7611476	1.00[CHD][hapmap]
rs7637015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640502	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9823592	1.00[EUR][1000 genomes]
rs9838595	1.00[EUR][1000 genomes]
rs9838728	1.00[CEU][hapmap]
rs9853587	1.00[CEU][hapmap]
rs9868056	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9883017	1.00[CEU][hapmap]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69211200-69229400	Weak transcription	Fetal Brain Male	brain
2	chr3:69211600-69230200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:69211600-69231000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:69214800-69230400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:69216200-69229800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:69217200-69230200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:69217400-69229800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:69217600-69230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:69218400-69230000	Weak transcription	Hela-S3	cervix
10	chr3:69218400-69247400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:69218400-69247800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:69219200-69230000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:69219800-69230800	Strong transcription	Placenta	Placenta
14	chr3:69220600-69229600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:69220800-69229800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:69220800-69231600	Weak transcription	Psoas Muscle	Psoas
17	chr3:69221000-69229400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:69221000-69230000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:69221200-69229400	Weak transcription	Left Ventricle	heart
20	chr3:69221200-69229800	Weak transcription	Aorta	Aorta
21	chr3:69222000-69229400	Weak transcription	HSMM	muscle
22	chr3:69222800-69237400	Strong transcription	Dnd41	blood
23	chr3:69222800-69245400	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:69223400-69232600	Strong transcription	Primary hematopoietic stem cells	blood
25	chr3:69223400-69237600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr3:69224200-69230400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:69224400-69230400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:69224400-69230600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr3:69224400-69237400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr3:69225200-69232600	Strong transcription	Fetal Brain Female	brain
31	chr3:69225600-69229400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:69225600-69230000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr3:69225600-69233200	Strong transcription	Fetal Stomach	stomach
34	chr3:69225800-69230000	Weak transcription	Ovary	ovary
35	chr3:69225800-69230000	Weak transcription	HSMMtube	muscle
36	chr3:69225800-69230600	Weak transcription	NHLF	lung
37	chr3:69226600-69229400	Enhancers	Fetal Intestine Large	intestine
38	chr3:69226600-69230400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:69226600-69230600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr3:69226600-69232000	Strong transcription	Brain Germinal Matrix	brain
41	chr3:69226600-69232600	Genic enhancers	Fetal Intestine Small	intestine
42	chr3:69226800-69232600	Genic enhancers	Brain Substantia Nigra	brain
43	chr3:69226800-69233400	Genic enhancers	HUVEC	blood vessel
44	chr3:69226800-69246800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr3:69227000-69230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:69227000-69230800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:69227000-69230800	Genic enhancers	Brain Cingulate Gyrus	brain
48	chr3:69227000-69232600	Strong transcription	Thymus	Thymus
49	chr3:69227400-69229400	Enhancers	HMEC	breast
50	chr3:69227400-69232200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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