Variant report

Variant	rs9838595
Chromosome Location	chr3:69248417-69248418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12053848	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12172931	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4855299	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6549187	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67268350	1.00[EUR][1000 genomes]
rs6804872	1.00[EUR][1000 genomes]
rs73835777	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637015	1.00[EUR][1000 genomes]
rs9823592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9862020	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398378	chr3:69240573-69271936	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69228600-69248600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:69230600-69248600	Weak transcription	Aorta	Aorta
3	chr3:69230600-69248600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:69230800-69248600	Weak transcription	Ovary	ovary
5	chr3:69231200-69248600	Weak transcription	Left Ventricle	heart
6	chr3:69231200-69248600	Weak transcription	Small Intestine	intestine
7	chr3:69231400-69249600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:69231600-69248600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:69231800-69249600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:69232000-69248800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:69232000-69249400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:69232200-69248600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:69232800-69249200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:69241200-69248600	Weak transcription	Colonic Mucosa	Colon
16	chr3:69241400-69248600	Weak transcription	Right Ventricle	heart
17	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
18	chr3:69242600-69248600	Weak transcription	Fetal Stomach	stomach
19	chr3:69242600-69248600	Weak transcription	Gastric	stomach
20	chr3:69242600-69248600	Weak transcription	Lung	lung
21	chr3:69242600-69249400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:69242600-69268800	Weak transcription	Spleen	Spleen
23	chr3:69244000-69264800	Weak transcription	Fetal Brain Female	brain
24	chr3:69244200-69261800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:69244600-69249400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:69245000-69248600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:69245800-69248600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:69246200-69249600	Weak transcription	HSMMtube	muscle
29	chr3:69246200-69266800	Weak transcription	HSMM	muscle
30	chr3:69246400-69249600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:69246400-69249600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:69246600-69248600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:69246600-69249600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:69246600-69249600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr3:69246600-69249600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:69247000-69249600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:69247000-69249600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:69247000-69249600	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr3:69247000-69254000	Weak transcription	Fetal Brain Male	brain
40	chr3:69247200-69248600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:69247200-69248600	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:69247200-69253200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:69247600-69249600	Active TSS	Duodenum Mucosa	Duodenum
44	chr3:69247600-69249800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr3:69247600-69249800	Enhancers	Fetal Heart	heart
46	chr3:69247800-69248600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:69247800-69248600	Weak transcription	Fetal Thymus	thymus
48	chr3:69247800-69248600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:69247800-69248600	Weak transcription	Stomach Mucosa	stomach
50	chr3:69247800-69249600	Weak transcription	Fetal Lung	lung

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