The 2.0 version of rSNPBase

Variant report

Variant rs6776243
Chromosome Location chr3:69253656-69253657
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:69232000-69275600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr3:69242400-69281600 Weak transcription Brain Germinal Matrix brain
3 chr3:69242600-69268800 Weak transcription Spleen Spleen
4 chr3:69244000-69264800 Weak transcription Fetal Brain Female brain
5 chr3:69244200-69261800 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr3:69246200-69266800 Weak transcription HSMM muscle
7 chr3:69247000-69254000 Weak transcription Fetal Brain Male brain
8 chr3:69248200-69257000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr3:69249000-69255400 Weak transcription Primary monocytes fromperipheralblood blood
10 chr3:69249000-69263000 Weak transcription Lung lung
11 chr3:69249400-69257600 Weak transcription Primary hematopoietic stem cells blood
12 chr3:69249800-69254600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr3:69249800-69254600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr3:69250000-69255200 Weak transcription Primary T cells fromperipheralblood blood
15 chr3:69250000-69258400 Weak transcription Fetal Thymus thymus
16 chr3:69250000-69261600 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr3:69250000-69263000 Weak transcription Fetal Muscle Trunk muscle
18 chr3:69250000-69269200 Weak transcription Thymus Thymus
19 chr3:69250000-69272400 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr3:69250000-69281600 Weak transcription Esophagus oesophagus
21 chr3:69250200-69254800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr3:69250200-69255400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr3:69250200-69255600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr3:69250200-69257600 Weak transcription Fetal Lung lung
25 chr3:69250200-69262000 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr3:69250200-69262800 Weak transcription Fetal Stomach stomach
27 chr3:69250200-69263200 Weak transcription Dnd41 blood
28 chr3:69250200-69268800 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr3:69250200-69268800 Weak transcription Ovary ovary
30 chr3:69250200-69286000 Weak transcription Colonic Mucosa Colon
31 chr3:69250400-69254800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr3:69250400-69260200 Weak transcription Fetal Muscle Leg muscle
33 chr3:69250400-69264800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr3:69250400-69268400 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr3:69250400-69280000 Weak transcription Fetal Kidney kidney
36 chr3:69251800-69254200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr3:69252600-69254000 Enhancers Primary T helper cells PMA-I stimulated --
38 chr3:69252600-69254000 Enhancers Brain Cingulate Gyrus brain
39 chr3:69252600-69254000 Enhancers Brain Hippocampus Middle brain
40 chr3:69252600-69254000 Enhancers Brain Substantia Nigra brain
41 chr3:69252600-69254000 Enhancers Fetal Intestine Large intestine
42 chr3:69252600-69254000 Enhancers Rectal Mucosa Donor 31 rectum
43 chr3:69252600-69254000 Flanking Active TSS NHEK skin
44 chr3:69252600-69254200 Enhancers Primary T regulatory cells fromperipheralblood blood
45 chr3:69252600-69254200 Enhancers Brain Angular Gyrus brain
46 chr3:69252600-69254200 Enhancers Brain Inferior Temporal Lobe brain
47 chr3:69252600-69254600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr3:69252600-69255000 Enhancers Fetal Heart heart
49 chr3:69253000-69254000 Enhancers Rectal Mucosa Donor 29 rectum
50 chr3:69253000-69254000 Enhancers HepG2 liver

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Last update: Aug 31, 2015