Variant report

Variant	rs35466234
Chromosome Location	chr3:69260898-69260899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69250039..69253834-chr3:69260660..69262607,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114541	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs34263064	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34416281	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34511838	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35423263	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35461234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35530977	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35860408	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36022055	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4075188	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4376041	0.85[EUR][1000 genomes]
rs4582065	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4621334	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4855301	0.81[EUR][1000 genomes]
rs62254460	0.82[EUR][1000 genomes]
rs6772387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6776027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6776243	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6781505	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6781739	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6782869	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6784841	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6785253	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6806528	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73097720	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73097725	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73097726	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73097740	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7616440	0.81[EUR][1000 genomes]
rs7639425	0.81[EUR][1000 genomes]
rs7640502	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9836612	0.81[EUR][1000 genomes]
rs9868056	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398378	chr3:69240573-69271936	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:69242600-69268800	Weak transcription	Spleen	Spleen
4	chr3:69244000-69264800	Weak transcription	Fetal Brain Female	brain
5	chr3:69244200-69261800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:69246200-69266800	Weak transcription	HSMM	muscle
7	chr3:69249000-69263000	Weak transcription	Lung	lung
8	chr3:69250000-69261600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:69250000-69263000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:69250000-69269200	Weak transcription	Thymus	Thymus
11	chr3:69250000-69272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:69250000-69281600	Weak transcription	Esophagus	oesophagus
13	chr3:69250200-69262000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:69250200-69262800	Weak transcription	Fetal Stomach	stomach
15	chr3:69250200-69263200	Weak transcription	Dnd41	blood
16	chr3:69250200-69268800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:69250200-69268800	Weak transcription	Ovary	ovary
18	chr3:69250200-69286000	Weak transcription	Colonic Mucosa	Colon
19	chr3:69250400-69264800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:69250400-69268400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr3:69250400-69280000	Weak transcription	Fetal Kidney	kidney
22	chr3:69253000-69266400	Weak transcription	Small Intestine	intestine
23	chr3:69253000-69297600	Weak transcription	Gastric	stomach
24	chr3:69253400-69277400	Weak transcription	Left Ventricle	heart
25	chr3:69253600-69263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:69253600-69266600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:69253600-69267600	Weak transcription	Placenta	Placenta
28	chr3:69254000-69280800	Weak transcription	Pancreas	Pancrea
29	chr3:69254000-69286000	Weak transcription	Right Ventricle	heart
30	chr3:69254200-69261800	Weak transcription	Brain Angular Gyrus	brain
31	chr3:69254200-69261800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr3:69254200-69263600	Weak transcription	HSMMtube	muscle
33	chr3:69254600-69261200	Weak transcription	NHEK	skin
34	chr3:69254600-69262800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:69254600-69299000	Weak transcription	Fetal Brain Male	brain
36	chr3:69256000-69261600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr3:69256200-69261800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr3:69256600-69269200	Weak transcription	Adipose Nuclei	Adipose
39	chr3:69257000-69261000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:69257400-69261000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:69257600-69261000	Strong transcription	Fetal Lung	lung
42	chr3:69257600-69261800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:69258000-69261600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:69258000-69262800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:69258400-69261000	Strong transcription	Fetal Thymus	thymus
46	chr3:69258600-69263400	Weak transcription	Aorta	Aorta
47	chr3:69259400-69261800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:69259400-69262400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr3:69259400-69266600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:69259800-69261000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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