Variant report

Variant	rs73097720
Chromosome Location	chr3:69262141-69262142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69261818..69263974-chr3:69274999..69277615,2	MCF-7	breast:
2	chr3:69250039..69253834-chr3:69260660..69262607,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114541	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs34263064	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34416281	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34511838	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35423263	0.81[AMR][1000 genomes]
rs35461234	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35466234	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35530977	0.83[AFR][1000 genomes]
rs35860408	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36022055	0.81[AMR][1000 genomes]
rs4075188	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4376041	0.81[EUR][1000 genomes]
rs4582065	0.81[AMR][1000 genomes]
rs4621334	0.81[AMR][1000 genomes]
rs4855301	0.83[ASN][1000 genomes]
rs62254460	0.83[ASN][1000 genomes]
rs6772387	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6776027	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6776243	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6781505	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6781739	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6782869	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6784841	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6785253	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6806528	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73097725	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73097726	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73097740	0.81[AMR][1000 genomes]
rs7616440	0.83[ASN][1000 genomes]
rs7639425	0.83[ASN][1000 genomes]
rs7640502	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9836612	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398378	chr3:69240573-69271936	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:69242600-69268800	Weak transcription	Spleen	Spleen
4	chr3:69244000-69264800	Weak transcription	Fetal Brain Female	brain
5	chr3:69246200-69266800	Weak transcription	HSMM	muscle
6	chr3:69249000-69263000	Weak transcription	Lung	lung
7	chr3:69250000-69263000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:69250000-69269200	Weak transcription	Thymus	Thymus
9	chr3:69250000-69272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:69250000-69281600	Weak transcription	Esophagus	oesophagus
11	chr3:69250200-69262800	Weak transcription	Fetal Stomach	stomach
12	chr3:69250200-69263200	Weak transcription	Dnd41	blood
13	chr3:69250200-69268800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:69250200-69268800	Weak transcription	Ovary	ovary
15	chr3:69250200-69286000	Weak transcription	Colonic Mucosa	Colon
16	chr3:69250400-69264800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:69250400-69268400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:69250400-69280000	Weak transcription	Fetal Kidney	kidney
19	chr3:69253000-69266400	Weak transcription	Small Intestine	intestine
20	chr3:69253000-69297600	Weak transcription	Gastric	stomach
21	chr3:69253400-69277400	Weak transcription	Left Ventricle	heart
22	chr3:69253600-69263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:69253600-69266600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:69253600-69267600	Weak transcription	Placenta	Placenta
25	chr3:69254000-69280800	Weak transcription	Pancreas	Pancrea
26	chr3:69254000-69286000	Weak transcription	Right Ventricle	heart
27	chr3:69254200-69263600	Weak transcription	HSMMtube	muscle
28	chr3:69254600-69262800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:69254600-69299000	Weak transcription	Fetal Brain Male	brain
30	chr3:69256600-69269200	Weak transcription	Adipose Nuclei	Adipose
31	chr3:69258000-69262800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:69258600-69263400	Weak transcription	Aorta	Aorta
33	chr3:69259400-69262400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr3:69259400-69266600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr3:69260000-69285800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:69260400-69262200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr3:69260400-69263400	Enhancers	Stomach Mucosa	stomach
38	chr3:69260400-69263800	Enhancers	Hela-S3	cervix
39	chr3:69260600-69262400	Enhancers	HMEC	breast
40	chr3:69260800-69263000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr3:69260800-69263000	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr3:69260800-69263000	Enhancers	HepG2	liver
43	chr3:69260800-69264000	Genic enhancers	Brain Hippocampus Middle	brain
44	chr3:69261000-69262800	Weak transcription	Fetal Thymus	thymus
45	chr3:69261000-69263000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:69261000-69263000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr3:69261000-69263000	Weak transcription	Fetal Intestine Large	intestine
48	chr3:69261000-69263200	Weak transcription	Fetal Lung	lung
49	chr3:69261000-69263200	Enhancers	HUVEC	blood vessel
50	chr3:69261000-69263400	Weak transcription	Brain Anterior Caudate	brain

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