Variant report

Variant	rs4541413
Chromosome Location	chr3:69237435-69237436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69237366..69240116-chr3:69241157..69243942,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11128118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11712024	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12053848	1.00[CEU][hapmap]
rs12172924	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12637416	0.83[ASW][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];0.84[ASN][1000 genomes]
rs13059488	0.89[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs13059687	0.89[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13082480	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28529735	0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4358306	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4450819	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4464459	1.00[GIH][hapmap]
rs4473559	1.00[GIH][hapmap]
rs4493438	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4504171	1.00[CEU][hapmap];0.89[MEX][hapmap]
rs4508786	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4508787	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4624565	0.89[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4855298	0.84[AMR][1000 genomes]
rs4855360	0.84[AMR][1000 genomes]
rs4855361	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56993809	0.84[AMR][1000 genomes]
rs57343254	0.84[AMR][1000 genomes]
rs57396300	0.84[AMR][1000 genomes]
rs61312273	0.84[AMR][1000 genomes]
rs6549187	1.00[CEU][hapmap]
rs67268350	0.81[ASN][1000 genomes]
rs6763046	0.96[GIH][hapmap]
rs6765309	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6792358	1.00[CEU][hapmap];0.89[MEX][hapmap]
rs6804718	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6804872	1.00[CEU][hapmap]
rs72930216	0.84[AMR][1000 genomes]
rs72930219	0.81[AMR][1000 genomes]
rs9310138	0.81[AMR][1000 genomes]
rs9831516	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9833167	0.89[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9836305	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9838728	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9847983	0.89[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9853587	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9853744	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9860235	0.90[JPT][hapmap];0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9872199	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9875511	0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs9883017	1.00[CEU][hapmap]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69218400-69247400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:69218400-69247800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:69222800-69245400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:69223400-69237600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr3:69226800-69246800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:69228400-69246800	Weak transcription	Primary T cells from cord blood	blood
7	chr3:69228600-69237600	Strong transcription	Fetal Thymus	thymus
8	chr3:69228600-69238200	Strong transcription	Fetal Lung	lung
9	chr3:69228600-69248600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:69228800-69241200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:69228800-69245800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:69228800-69246000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:69229000-69248400	Weak transcription	Primary B cells from cord blood	blood
14	chr3:69229200-69246000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:69229400-69237600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:69229600-69248200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:69230200-69238400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:69230600-69240000	Weak transcription	Right Ventricle	heart
19	chr3:69230600-69243000	Weak transcription	Fetal Kidney	kidney
20	chr3:69230600-69248600	Weak transcription	Aorta	Aorta
21	chr3:69230600-69248600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:69230800-69248600	Weak transcription	Ovary	ovary
23	chr3:69231000-69240000	Weak transcription	Colonic Mucosa	Colon
24	chr3:69231000-69240800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:69231000-69240800	Weak transcription	Esophagus	oesophagus
26	chr3:69231000-69240800	Weak transcription	Spleen	Spleen
27	chr3:69231000-69243600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:69231200-69239800	Weak transcription	Gastric	stomach
29	chr3:69231200-69246800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:69231200-69248600	Weak transcription	Left Ventricle	heart
31	chr3:69231200-69248600	Weak transcription	Small Intestine	intestine
32	chr3:69231400-69239600	Weak transcription	Pancreas	Pancrea
33	chr3:69231400-69246400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:69231400-69246600	Weak transcription	Fetal Brain Male	brain
35	chr3:69231400-69248400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr3:69231400-69249600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:69231600-69248600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:69231800-69240000	Weak transcription	Fetal Heart	heart
39	chr3:69231800-69249600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:69232000-69240000	Weak transcription	Brain Germinal Matrix	brain
41	chr3:69232000-69247400	Weak transcription	Hela-S3	cervix
42	chr3:69232000-69248800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:69232000-69249400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:69232200-69248600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:69232400-69246600	Strong transcription	Placenta	Placenta
47	chr3:69232400-69247400	Weak transcription	Stomach Mucosa	stomach
48	chr3:69232400-69248400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:69232400-69248400	Weak transcription	Brain Angular Gyrus	brain
50	chr3:69232600-69239800	Weak transcription	Brain Cingulate Gyrus	brain

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