Variant report

Variant	rs9831516
Chromosome Location	chr3:69230061-69230062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11128118	0.89[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11712024	0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12172924	0.80[ASN][1000 genomes]
rs12637416	0.81[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap]
rs13059488	0.81[JPT][hapmap]
rs13059687	0.81[JPT][hapmap]
rs13082480	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28529735	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4450819	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4464459	1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4473559	0.81[ASW][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.91[MKK][hapmap];0.82[ASN][1000 genomes]
rs4493438	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4508786	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4508787	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4541413	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4855298	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855360	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56993809	0.91[AMR][1000 genomes]
rs57343254	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57396300	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61312273	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6763046	0.83[CHB][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.82[MKK][hapmap];0.85[ASN][1000 genomes]
rs6765197	0.86[ASN][1000 genomes]
rs6804718	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72930216	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930219	0.88[AMR][1000 genomes]
rs9310138	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9310140	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs9836305	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838728	0.80[JPT][hapmap]
rs9847983	0.81[JPT][hapmap]
rs9853318	0.88[ASN][1000 genomes]
rs9853587	0.85[CHB][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9853744	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9872199	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9872489	0.81[ASN][1000 genomes]
rs9875511	0.88[JPT][hapmap]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69211600-69230200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:69211600-69231000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:69214800-69230400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:69217200-69230200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:69217600-69230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:69218400-69247400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:69218400-69247800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:69219800-69230800	Strong transcription	Placenta	Placenta
9	chr3:69220800-69231600	Weak transcription	Psoas Muscle	Psoas
10	chr3:69222800-69237400	Strong transcription	Dnd41	blood
11	chr3:69222800-69245400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:69223400-69232600	Strong transcription	Primary hematopoietic stem cells	blood
13	chr3:69223400-69237600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr3:69224200-69230400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:69224400-69230400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:69224400-69230600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:69224400-69237400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:69225200-69232600	Strong transcription	Fetal Brain Female	brain
19	chr3:69225600-69233200	Strong transcription	Fetal Stomach	stomach
20	chr3:69225800-69230600	Weak transcription	NHLF	lung
21	chr3:69226600-69230400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:69226600-69230600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:69226600-69232000	Strong transcription	Brain Germinal Matrix	brain
24	chr3:69226600-69232600	Genic enhancers	Fetal Intestine Small	intestine
25	chr3:69226800-69232600	Genic enhancers	Brain Substantia Nigra	brain
26	chr3:69226800-69233400	Genic enhancers	HUVEC	blood vessel
27	chr3:69226800-69246800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr3:69227000-69230800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:69227000-69230800	Genic enhancers	Brain Cingulate Gyrus	brain
30	chr3:69227000-69232600	Strong transcription	Thymus	Thymus
31	chr3:69227400-69232200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr3:69227600-69231000	Strong transcription	Spleen	Spleen
33	chr3:69228000-69231000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:69228200-69230600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr3:69228400-69230600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:69228400-69230600	Strong transcription	Rectal Smooth Muscle	rectum
37	chr3:69228400-69230800	Strong transcription	Adipose Nuclei	Adipose
38	chr3:69228400-69231800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr3:69228400-69246800	Weak transcription	Primary T cells from cord blood	blood
40	chr3:69228600-69230200	Weak transcription	Right Atrium	heart
41	chr3:69228600-69230400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr3:69228600-69230400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:69228600-69230400	Strong transcription	Fetal Muscle Leg	muscle
44	chr3:69228600-69230400	Weak transcription	NHDF-Ad	bronchial
45	chr3:69228600-69230600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr3:69228600-69230600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr3:69228600-69230600	Weak transcription	NH-A	brain
48	chr3:69228600-69230800	Genic enhancers	Brain Hippocampus Middle	brain
49	chr3:69228600-69230800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr3:69228600-69231000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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