Variant report

Variant	rs4855360
Chromosome Location	chr3:69229725-69229726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11128118	0.84[AMR][1000 genomes]
rs11712024	0.82[AMR][1000 genomes]
rs4450819	0.94[AMR][1000 genomes]
rs4508786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4541413	0.84[AMR][1000 genomes]
rs4855298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4855361	0.83[AMR][1000 genomes]
rs56993809	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57343254	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57396300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57600863	0.84[ASN][1000 genomes]
rs61312273	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6804718	0.83[AMR][1000 genomes]
rs72928330	0.84[ASN][1000 genomes]
rs72930216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72930219	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9310138	0.86[AMR][1000 genomes]
rs9831516	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836305	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872199	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69211600-69230200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:69211600-69231000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:69214800-69230400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:69216200-69229800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:69217200-69230200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:69217400-69229800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:69217600-69230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:69218400-69230000	Weak transcription	Hela-S3	cervix
9	chr3:69218400-69247400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:69218400-69247800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:69219200-69230000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:69219800-69230800	Strong transcription	Placenta	Placenta
13	chr3:69220800-69229800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:69220800-69231600	Weak transcription	Psoas Muscle	Psoas
15	chr3:69221000-69230000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:69221200-69229800	Weak transcription	Aorta	Aorta
17	chr3:69222800-69237400	Strong transcription	Dnd41	blood
18	chr3:69222800-69245400	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:69223400-69232600	Strong transcription	Primary hematopoietic stem cells	blood
20	chr3:69223400-69237600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr3:69224200-69230400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:69224400-69230400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:69224400-69230600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr3:69224400-69237400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr3:69225200-69232600	Strong transcription	Fetal Brain Female	brain
26	chr3:69225600-69230000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:69225600-69233200	Strong transcription	Fetal Stomach	stomach
28	chr3:69225800-69230000	Weak transcription	Ovary	ovary
29	chr3:69225800-69230000	Weak transcription	HSMMtube	muscle
30	chr3:69225800-69230600	Weak transcription	NHLF	lung
31	chr3:69226600-69230400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:69226600-69230600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:69226600-69232000	Strong transcription	Brain Germinal Matrix	brain
34	chr3:69226600-69232600	Genic enhancers	Fetal Intestine Small	intestine
35	chr3:69226800-69232600	Genic enhancers	Brain Substantia Nigra	brain
36	chr3:69226800-69233400	Genic enhancers	HUVEC	blood vessel
37	chr3:69226800-69246800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr3:69227000-69230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:69227000-69230800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:69227000-69230800	Genic enhancers	Brain Cingulate Gyrus	brain
41	chr3:69227000-69232600	Strong transcription	Thymus	Thymus
42	chr3:69227400-69232200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:69227600-69231000	Strong transcription	Spleen	Spleen
44	chr3:69228000-69231000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:69228200-69230000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:69228200-69230600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:69228400-69230600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:69228400-69230600	Strong transcription	Rectal Smooth Muscle	rectum
49	chr3:69228400-69230800	Strong transcription	Adipose Nuclei	Adipose
50	chr3:69228400-69231800	Weak transcription	Placenta Amnion	Placenta Amnion

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