Variant report

Variant	rs57600863
Chromosome Location	chr3:69235732-69235733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs4282065	0.82[AMR][1000 genomes]
rs4464459	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4473559	1.00[EUR][1000 genomes]
rs4855298	0.88[ASN][1000 genomes]
rs4855360	0.84[ASN][1000 genomes]
rs56815074	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56993809	0.81[ASN][1000 genomes]
rs57343254	0.81[ASN][1000 genomes]
rs57396300	0.81[ASN][1000 genomes]
rs57671407	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57765607	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58068554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58110267	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60770504	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61312273	0.81[ASN][1000 genomes]
rs6764666	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6777671	0.89[ASN][1000 genomes]
rs6789821	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72928304	0.86[ASN][1000 genomes]
rs72928308	0.87[ASN][1000 genomes]
rs72928330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72930208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72930216	0.81[ASN][1000 genomes]
rs72930219	0.80[ASN][1000 genomes]
rs72930239	0.91[ASN][1000 genomes]
rs7635306	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7647940	0.91[ASN][1000 genomes]
rs9310140	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69218400-69247400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:69218400-69247800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:69222800-69237400	Strong transcription	Dnd41	blood
4	chr3:69222800-69245400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:69223400-69237600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr3:69224400-69237400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:69226800-69246800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr3:69228400-69246800	Weak transcription	Primary T cells from cord blood	blood
9	chr3:69228600-69237600	Strong transcription	Fetal Thymus	thymus
10	chr3:69228600-69238200	Strong transcription	Fetal Lung	lung
11	chr3:69228600-69248600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:69228800-69241200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:69228800-69245800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:69228800-69246000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:69229000-69248400	Weak transcription	Primary B cells from cord blood	blood
16	chr3:69229200-69246000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:69229400-69237000	Strong transcription	Lung	lung
18	chr3:69229400-69237600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:69229600-69248200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:69230200-69238400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:69230600-69240000	Weak transcription	Right Ventricle	heart
22	chr3:69230600-69243000	Weak transcription	Fetal Kidney	kidney
23	chr3:69230600-69248600	Weak transcription	Aorta	Aorta
24	chr3:69230600-69248600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:69230800-69235800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:69230800-69248600	Weak transcription	Ovary	ovary
27	chr3:69231000-69240000	Weak transcription	Colonic Mucosa	Colon
28	chr3:69231000-69240800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:69231000-69240800	Weak transcription	Esophagus	oesophagus
30	chr3:69231000-69240800	Weak transcription	Spleen	Spleen
31	chr3:69231000-69243600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:69231200-69239800	Weak transcription	Gastric	stomach
33	chr3:69231200-69246800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:69231200-69248600	Weak transcription	Left Ventricle	heart
35	chr3:69231200-69248600	Weak transcription	Small Intestine	intestine
36	chr3:69231400-69239600	Weak transcription	Pancreas	Pancrea
37	chr3:69231400-69246400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr3:69231400-69246600	Weak transcription	Fetal Brain Male	brain
39	chr3:69231400-69248400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr3:69231400-69249600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:69231600-69248600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:69231800-69240000	Weak transcription	Fetal Heart	heart
43	chr3:69231800-69249600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:69232000-69237000	Strong transcription	NHEK	skin
45	chr3:69232000-69240000	Weak transcription	Brain Germinal Matrix	brain
46	chr3:69232000-69247400	Weak transcription	Hela-S3	cervix
47	chr3:69232000-69248800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:69232000-69249400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:69232200-69248600	Weak transcription	Placenta Amnion	Placenta Amnion

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