Variant report

Variant	rs72930239
Chromosome Location	chr3:69248160-69248161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56815074	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs56993809	0.87[ASN][1000 genomes]
rs57343254	0.87[ASN][1000 genomes]
rs57396300	0.87[ASN][1000 genomes]
rs57600863	0.91[ASN][1000 genomes]
rs57671407	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs57765607	0.98[ASN][1000 genomes]
rs58068554	0.99[ASN][1000 genomes]
rs58110267	0.98[ASN][1000 genomes]
rs60770504	0.99[ASN][1000 genomes]
rs61312273	0.87[ASN][1000 genomes]
rs6764666	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6777671	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6789821	0.98[ASN][1000 genomes]
rs72928308	0.81[ASN][1000 genomes]
rs72928330	0.86[ASN][1000 genomes]
rs72930208	0.98[ASN][1000 genomes]
rs72930216	0.87[ASN][1000 genomes]
rs72930219	0.88[ASN][1000 genomes]
rs7635306	0.99[ASN][1000 genomes]
rs7647940	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398378	chr3:69240573-69271936	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69228600-69248600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:69229000-69248400	Weak transcription	Primary B cells from cord blood	blood
3	chr3:69229600-69248200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:69230600-69248600	Weak transcription	Aorta	Aorta
5	chr3:69230600-69248600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:69230800-69248600	Weak transcription	Ovary	ovary
7	chr3:69231200-69248600	Weak transcription	Left Ventricle	heart
8	chr3:69231200-69248600	Weak transcription	Small Intestine	intestine
9	chr3:69231400-69248400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:69231400-69249600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:69231600-69248600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:69231800-69249600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:69232000-69248800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:69232000-69249400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:69232200-69248600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:69232400-69248400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:69232400-69248400	Weak transcription	Brain Angular Gyrus	brain
19	chr3:69232800-69249200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:69234000-69248200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:69236400-69248400	Weak transcription	HepG2	liver
22	chr3:69238200-69248400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:69241200-69248600	Weak transcription	Colonic Mucosa	Colon
24	chr3:69241400-69248600	Weak transcription	Right Ventricle	heart
25	chr3:69241800-69248400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
27	chr3:69242600-69248200	Weak transcription	Pancreas	Pancrea
28	chr3:69242600-69248600	Weak transcription	Fetal Stomach	stomach
29	chr3:69242600-69248600	Weak transcription	Gastric	stomach
30	chr3:69242600-69248600	Weak transcription	Lung	lung
31	chr3:69242600-69249400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:69242600-69268800	Weak transcription	Spleen	Spleen
33	chr3:69244000-69264800	Weak transcription	Fetal Brain Female	brain
34	chr3:69244200-69248400	Weak transcription	Fetal Kidney	kidney
35	chr3:69244200-69261800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:69244400-69248400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:69244600-69249400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr3:69245000-69248400	Weak transcription	Brain Anterior Caudate	brain
39	chr3:69245000-69248600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:69245800-69248600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:69246200-69248400	Weak transcription	Brain Hippocampus Middle	brain
42	chr3:69246200-69249600	Weak transcription	HSMMtube	muscle
43	chr3:69246200-69266800	Weak transcription	HSMM	muscle
44	chr3:69246400-69249600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:69246400-69249600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:69246600-69248400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr3:69246600-69248400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:69246600-69248400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:69246600-69248600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:69246600-69249600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links