Variant report

Variant	rs4855298
Chromosome Location	chr3:69238235-69238236
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69237366..69240116-chr3:69241157..69243942,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11128118	0.84[AMR][1000 genomes]
rs11712024	0.82[AMR][1000 genomes]
rs4450819	0.94[AMR][1000 genomes]
rs4508786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4541413	0.84[AMR][1000 genomes]
rs4855360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4855361	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56993809	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57343254	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57396300	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57600863	0.88[ASN][1000 genomes]
rs58068554	0.80[ASN][1000 genomes]
rs61312273	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6804718	0.83[AMR][1000 genomes]
rs72928330	0.81[ASN][1000 genomes]
rs72930216	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72930219	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9310138	0.86[AMR][1000 genomes]
rs9831516	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836305	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872199	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69218400-69247400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:69218400-69247800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:69222800-69245400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:69226800-69246800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:69228400-69246800	Weak transcription	Primary T cells from cord blood	blood
6	chr3:69228600-69248600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:69228800-69241200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr3:69228800-69245800	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:69228800-69246000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:69229000-69248400	Weak transcription	Primary B cells from cord blood	blood
11	chr3:69229200-69246000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:69229600-69248200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:69230200-69238400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:69230600-69240000	Weak transcription	Right Ventricle	heart
15	chr3:69230600-69243000	Weak transcription	Fetal Kidney	kidney
16	chr3:69230600-69248600	Weak transcription	Aorta	Aorta
17	chr3:69230600-69248600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:69230800-69248600	Weak transcription	Ovary	ovary
19	chr3:69231000-69240000	Weak transcription	Colonic Mucosa	Colon
20	chr3:69231000-69240800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:69231000-69240800	Weak transcription	Esophagus	oesophagus
22	chr3:69231000-69240800	Weak transcription	Spleen	Spleen
23	chr3:69231000-69243600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:69231200-69239800	Weak transcription	Gastric	stomach
25	chr3:69231200-69246800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:69231200-69248600	Weak transcription	Left Ventricle	heart
27	chr3:69231200-69248600	Weak transcription	Small Intestine	intestine
28	chr3:69231400-69239600	Weak transcription	Pancreas	Pancrea
29	chr3:69231400-69246400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr3:69231400-69246600	Weak transcription	Fetal Brain Male	brain
31	chr3:69231400-69248400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:69231400-69249600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:69231600-69248600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:69231800-69240000	Weak transcription	Fetal Heart	heart
35	chr3:69231800-69249600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:69232000-69240000	Weak transcription	Brain Germinal Matrix	brain
37	chr3:69232000-69247400	Weak transcription	Hela-S3	cervix
38	chr3:69232000-69248800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:69232000-69249400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:69232200-69248600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr3:69232400-69246600	Strong transcription	Placenta	Placenta
43	chr3:69232400-69247400	Weak transcription	Stomach Mucosa	stomach
44	chr3:69232400-69248400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:69232400-69248400	Weak transcription	Brain Angular Gyrus	brain
46	chr3:69232600-69239800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr3:69232600-69242800	Weak transcription	HSMMtube	muscle
48	chr3:69232600-69246000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr3:69232800-69249200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:69233200-69247200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links