Variant report

Variant	rs9836305
Chromosome Location	chr3:69230801-69230802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11128118	0.89[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.82[LWK][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11712024	0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12172924	0.80[ASN][1000 genomes]
rs12637416	0.81[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap]
rs13059488	0.81[JPT][hapmap]
rs13059687	0.81[JPT][hapmap]
rs13082480	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28529735	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4450819	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4464459	1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4473559	0.81[ASW][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.91[MKK][hapmap];0.82[ASN][1000 genomes]
rs4493438	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4508786	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4508787	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4541413	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4855298	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855360	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56993809	0.91[AMR][1000 genomes]
rs57343254	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57396300	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61312273	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6763046	0.83[CHB][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.82[MKK][hapmap];0.85[ASN][1000 genomes]
rs6765197	0.86[ASN][1000 genomes]
rs6804718	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72930216	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930219	0.88[AMR][1000 genomes]
rs9310138	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9310140	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs9831516	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838728	0.80[JPT][hapmap]
rs9847983	0.81[JPT][hapmap]
rs9853318	0.88[ASN][1000 genomes]
rs9853587	0.85[CHB][hapmap];0.90[CHD][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9853744	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9872199	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9872489	0.81[ASN][1000 genomes]
rs9875511	0.88[JPT][hapmap]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69211600-69231000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:69218400-69247400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:69218400-69247800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:69220800-69231600	Weak transcription	Psoas Muscle	Psoas
5	chr3:69222800-69237400	Strong transcription	Dnd41	blood
6	chr3:69222800-69245400	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:69223400-69232600	Strong transcription	Primary hematopoietic stem cells	blood
8	chr3:69223400-69237600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr3:69224400-69237400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:69225200-69232600	Strong transcription	Fetal Brain Female	brain
11	chr3:69225600-69233200	Strong transcription	Fetal Stomach	stomach
12	chr3:69226600-69232000	Strong transcription	Brain Germinal Matrix	brain
13	chr3:69226600-69232600	Genic enhancers	Fetal Intestine Small	intestine
14	chr3:69226800-69232600	Genic enhancers	Brain Substantia Nigra	brain
15	chr3:69226800-69233400	Genic enhancers	HUVEC	blood vessel
16	chr3:69226800-69246800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr3:69227000-69232600	Strong transcription	Thymus	Thymus
18	chr3:69227400-69232200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:69227600-69231000	Strong transcription	Spleen	Spleen
20	chr3:69228000-69231000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:69228400-69231800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:69228400-69246800	Weak transcription	Primary T cells from cord blood	blood
23	chr3:69228600-69231000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:69228600-69231000	Strong transcription	Esophagus	oesophagus
25	chr3:69228600-69237600	Strong transcription	Fetal Thymus	thymus
26	chr3:69228600-69238200	Strong transcription	Fetal Lung	lung
27	chr3:69228600-69248600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr3:69228800-69231000	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr3:69228800-69231200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:69228800-69241200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:69228800-69245800	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:69228800-69246000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:69229000-69231400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:69229000-69232400	Genic enhancers	Brain Anterior Caudate	brain
35	chr3:69229000-69248400	Weak transcription	Primary B cells from cord blood	blood
36	chr3:69229200-69231000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:69229200-69231800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr3:69229200-69232800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr3:69229200-69232800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr3:69229200-69246000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:69229400-69231400	Strong transcription	Fetal Brain Male	brain
42	chr3:69229400-69232400	Genic enhancers	Rectal Mucosa Donor 29	rectum
43	chr3:69229400-69232600	Genic enhancers	Fetal Intestine Large	intestine
44	chr3:69229400-69232600	Genic enhancers	Rectal Mucosa Donor 31	rectum
45	chr3:69229400-69237000	Strong transcription	Lung	lung
46	chr3:69229400-69237600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:69229600-69231000	Strong transcription	NHEK	skin
48	chr3:69229600-69248200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:69229800-69231200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:69229800-69232000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links