Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69187723..69190468-chr3:69191360..69194154,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11128114	0.83[EUR][1000 genomes]
rs11128118	1.00[CEU][hapmap]
rs11712024	1.00[CEU][hapmap]
rs11719988	0.80[ASN][1000 genomes]
rs12053848	1.00[CEU][hapmap]
rs4407408	0.83[EUR][1000 genomes]
rs4425262	0.83[EUR][1000 genomes]
rs4446215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4461426	0.83[EUR][1000 genomes]
rs4504171	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs4508787	1.00[CEU][hapmap]
rs4522769	0.83[EUR][1000 genomes]
rs4541413	1.00[CEU][hapmap]
rs4560302	0.83[EUR][1000 genomes]
rs4563416	0.83[EUR][1000 genomes]
rs4621333	0.83[EUR][1000 genomes]
rs57774890	1.00[EUR][1000 genomes]
rs58181265	1.00[EUR][1000 genomes]
rs58860053	1.00[EUR][1000 genomes]
rs61006449	1.00[EUR][1000 genomes]
rs6549187	1.00[CEU][hapmap]
rs6779055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792358	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs6797538	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799247	1.00[EUR][1000 genomes]
rs6804872	1.00[CEU][hapmap]
rs72924899	1.00[EUR][1000 genomes]
rs72924901	1.00[EUR][1000 genomes]
rs72926297	0.83[EUR][1000 genomes]
rs72926723	1.00[EUR][1000 genomes]
rs72926734	1.00[EUR][1000 genomes]
rs7638543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838728	1.00[CEU][hapmap]
rs9853587	1.00[CEU][hapmap]
rs9883017	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69190400-69194200	Enhancers	Hela-S3	cervix
2	chr3:69191400-69195000	Enhancers	K562	blood
3	chr3:69192200-69194200	Weak transcription	HSMMtube	muscle
4	chr3:69192400-69194200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
5	chr3:69192800-69194200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr3:69192800-69194400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:69193000-69194200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
8	chr3:69193000-69194400	Enhancers	Fetal Muscle Leg	muscle
9	chr3:69193200-69194600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr3:69193400-69193800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:69193400-69194600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr3:69193400-69195200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:69193400-69195200	Enhancers	Placenta	Placenta
14	chr3:69193600-69194200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr3:69193600-69194200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:69193600-69194400	Enhancers	Psoas Muscle	Psoas
17	chr3:69193600-69194600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr3:69193600-69195200	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search: