Variant report

Variant	rs72927588
Chromosome Location	chr1:71694100-71694101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17091044	1.00[AMR][1000 genomes]
rs17091070	1.00[AMR][1000 genomes]
rs57105774	1.00[AMR][1000 genomes]
rs59260746	1.00[AMR][1000 genomes]
rs72927560	1.00[AMR][1000 genomes]
rs72927592	1.00[AMR][1000 genomes]
rs72929513	1.00[AMR][1000 genomes]
rs72929516	1.00[AMR][1000 genomes]
rs72929542	1.00[AMR][1000 genomes]
rs72930543	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71693600-71695400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:71693600-71695400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:71693800-71695000	Enhancers	Fetal Brain Female	brain
4	chr1:71693800-71695400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:71694000-71694600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:71694000-71695000	Bivalent Enhancer	Fetal Heart	heart
7	chr1:71694000-71697000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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