Variant report
| Variant | rs72927635 |
|---|---|
| Chromosome Location | chr1:62200238-62200239 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:62189181..62192315-chr1:62198499..62200681,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162604 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10493311 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11539585 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11802679 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11805607 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13375232 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1353424 | 1.00[EUR][1000 genomes] |
| rs17122675 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17122684 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17122726 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17122742 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1890262 | 1.00[EUR][1000 genomes] |
| rs2051137 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57862885 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57901641 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61285999 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6698090 | 1.00[EUR][1000 genomes] |
| rs72925623 | 1.00[EUR][1000 genomes] |
| rs72925628 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72925658 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925685 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72925687 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72927617 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7544197 | 1.00[EUR][1000 genomes] |
| rs7551993 | 1.00[EUR][1000 genomes] |
| rs7554012 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000294 | chr1:61746280-62350718 | Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:62191400-62207400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
