Variant report

Variant	rs72928069
Chromosome Location	chr3:88857537-88857538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1114350	1.00[EUR][1000 genomes]
rs1114351	1.00[EUR][1000 genomes]
rs12107209	1.00[EUR][1000 genomes]
rs1601103	1.00[EUR][1000 genomes]
rs1601109	1.00[EUR][1000 genomes]
rs55715539	1.00[EUR][1000 genomes]
rs55798739	1.00[EUR][1000 genomes]
rs60328167	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6764417	1.00[EUR][1000 genomes]
rs6775646	1.00[EUR][1000 genomes]
rs6792300	1.00[EUR][1000 genomes]
rs6797605	1.00[EUR][1000 genomes]
rs6804468	1.00[EUR][1000 genomes]
rs6805422	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911915	0.85[AFR][1000 genomes]
rs72925979	1.00[EUR][1000 genomes]
rs72925980	1.00[EUR][1000 genomes]
rs72925984	1.00[EUR][1000 genomes]
rs72925985	1.00[EUR][1000 genomes]
rs72925988	1.00[EUR][1000 genomes]
rs72925995	1.00[EUR][1000 genomes]
rs72925999	1.00[EUR][1000 genomes]
rs72928027	1.00[EUR][1000 genomes]
rs72928032	1.00[EUR][1000 genomes]
rs72928041	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928048	1.00[EUR][1000 genomes]
rs72928053	1.00[EUR][1000 genomes]
rs72928054	1.00[EUR][1000 genomes]
rs72928057	1.00[EUR][1000 genomes]
rs72928059	1.00[EUR][1000 genomes]
rs72928060	1.00[EUR][1000 genomes]
rs72928061	1.00[EUR][1000 genomes]
rs72928070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845280	1.00[EUR][1000 genomes]
rs73848108	1.00[EUR][1000 genomes]
rs73848123	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7609629	1.00[EUR][1000 genomes]
rs7609809	1.00[EUR][1000 genomes]
rs7614364	1.00[EUR][1000 genomes]
rs7615180	1.00[EUR][1000 genomes]
rs7621444	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7630612	1.00[EUR][1000 genomes]
rs7635596	1.00[EUR][1000 genomes]
rs7647875	1.00[EUR][1000 genomes]
rs7652426	1.00[EUR][1000 genomes]
rs7653692	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv877157	chr3:88690163-88974863	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88855800-88858000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:88855800-88859600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:88856000-88858400	Enhancers	Fetal Intestine Large	intestine
4	chr3:88856000-88859400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:88856600-88857600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:88856600-88858200	Enhancers	HMEC	breast
7	chr3:88857200-88857600	Weak transcription	Fetal Intestine Small	intestine
8	chr3:88857200-88858800	Weak transcription	Fetal Heart	heart
9	chr3:88857200-88858800	Enhancers	NHEK	skin
10	chr3:88857200-88858800	Weak transcription	Osteobl	bone
11	chr3:88857400-88858200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:88857400-88858400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:88857400-88858800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:88857400-88859000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:88857400-88859000	Weak transcription	Hela-S3	cervix
16	chr3:88857400-88859200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:88857400-88859200	Weak transcription	NH-A	brain
18	chr3:88857400-88859600	Weak transcription	NHDF-Ad	bronchial

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