Variant report

Variant	rs73845280
Chromosome Location	chr3:88783228-88783229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1114350	1.00[EUR][1000 genomes]
rs1114351	1.00[EUR][1000 genomes]
rs12107209	1.00[EUR][1000 genomes]
rs1601103	1.00[EUR][1000 genomes]
rs1601109	1.00[EUR][1000 genomes]
rs55715539	1.00[EUR][1000 genomes]
rs55798739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59780992	0.80[AFR][1000 genomes]
rs60328167	1.00[EUR][1000 genomes]
rs60830237	0.83[AFR][1000 genomes]
rs6551363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6551364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764417	1.00[EUR][1000 genomes]
rs6775646	1.00[EUR][1000 genomes]
rs6792300	1.00[EUR][1000 genomes]
rs6797605	1.00[EUR][1000 genomes]
rs6804468	1.00[EUR][1000 genomes]
rs6805422	1.00[EUR][1000 genomes]
rs6808209	0.80[AFR][1000 genomes]
rs72925979	1.00[EUR][1000 genomes]
rs72925980	1.00[EUR][1000 genomes]
rs72925984	1.00[EUR][1000 genomes]
rs72925985	1.00[EUR][1000 genomes]
rs72925988	1.00[EUR][1000 genomes]
rs72925995	1.00[EUR][1000 genomes]
rs72925999	1.00[EUR][1000 genomes]
rs72928027	1.00[EUR][1000 genomes]
rs72928032	1.00[EUR][1000 genomes]
rs72928041	1.00[EUR][1000 genomes]
rs72928048	1.00[EUR][1000 genomes]
rs72928053	1.00[EUR][1000 genomes]
rs72928054	1.00[EUR][1000 genomes]
rs72928057	1.00[EUR][1000 genomes]
rs72928059	1.00[EUR][1000 genomes]
rs72928060	1.00[EUR][1000 genomes]
rs72928061	1.00[EUR][1000 genomes]
rs72928069	1.00[EUR][1000 genomes]
rs72928070	1.00[EUR][1000 genomes]
rs72928096	1.00[EUR][1000 genomes]
rs72928098	1.00[EUR][1000 genomes]
rs72929853	1.00[EUR][1000 genomes]
rs73845364	0.80[AFR][1000 genomes]
rs73847530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848108	1.00[EUR][1000 genomes]
rs73848123	1.00[EUR][1000 genomes]
rs7609629	1.00[EUR][1000 genomes]
rs7609809	1.00[EUR][1000 genomes]
rs7614364	1.00[EUR][1000 genomes]
rs7615180	1.00[EUR][1000 genomes]
rs7621444	1.00[EUR][1000 genomes]
rs7625197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7630612	1.00[EUR][1000 genomes]
rs7635596	1.00[EUR][1000 genomes]
rs7647875	1.00[EUR][1000 genomes]
rs7652426	1.00[EUR][1000 genomes]
rs7653692	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv877156	chr3:88690163-88803526	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877157	chr3:88690163-88974863	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004576	chr3:88754200-88827487	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88782600-88783600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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