Variant report

Variant	rs73847530
Chromosome Location	chr3:88757013-88757014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2088206	1.00[EUR][1000 genomes]
rs55798739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59539646	1.00[EUR][1000 genomes]
rs59780992	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60830237	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6551363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6551364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762401	1.00[EUR][1000 genomes]
rs6808209	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72921984	1.00[EUR][1000 genomes]
rs73845280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845342	1.00[EUR][1000 genomes]
rs73845364	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845365	1.00[EUR][1000 genomes]
rs73845367	1.00[EUR][1000 genomes]
rs73847508	1.00[EUR][1000 genomes]
rs73847513	1.00[EUR][1000 genomes]
rs7611436	1.00[EUR][1000 genomes]
rs7625197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv877156	chr3:88690163-88803526	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877157	chr3:88690163-88974863	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004576	chr3:88754200-88827487	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88756800-88757200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:88756800-88757200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:88756800-88757200	Enhancers	Fetal Heart	heart
4	chr3:88756800-88757200	Enhancers	HMEC	breast
5	chr3:88756800-88757400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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