Variant report

Variant	rs2088206
Chromosome Location	chr3:88740566-88740567
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs59539646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59780992	1.00[EUR][1000 genomes]
rs60830237	1.00[EUR][1000 genomes]
rs6551363	1.00[EUR][1000 genomes]
rs6551364	1.00[EUR][1000 genomes]
rs6762401	1.00[EUR][1000 genomes]
rs6808209	1.00[EUR][1000 genomes]
rs72921984	1.00[EUR][1000 genomes]
rs73845342	1.00[EUR][1000 genomes]
rs73845364	1.00[EUR][1000 genomes]
rs73845365	1.00[EUR][1000 genomes]
rs73845367	1.00[EUR][1000 genomes]
rs73847508	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847530	1.00[EUR][1000 genomes]
rs7611436	1.00[EUR][1000 genomes]
rs7625197	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv877156	chr3:88690163-88803526	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877157	chr3:88690163-88974863	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1009261	chr3:88700735-88754260	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536636	chr3:88700735-88754260	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88738800-88741000	Enhancers	Fetal Intestine Large	intestine
2	chr3:88738800-88741000	Enhancers	Fetal Intestine Small	intestine
3	chr3:88739400-88741200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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