Variant report
| Variant | rs7611436 |
|---|---|
| Chromosome Location | chr3:88591185-88591186 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1463474 | 1.00[EUR][1000 genomes] |
| rs1563669 | 1.00[EUR][1000 genomes] |
| rs2088206 | 1.00[EUR][1000 genomes] |
| rs59235641 | 1.00[EUR][1000 genomes] |
| rs59539646 | 1.00[EUR][1000 genomes] |
| rs59780992 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60830237 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6551363 | 1.00[EUR][1000 genomes] |
| rs6551364 | 1.00[EUR][1000 genomes] |
| rs6762401 | 1.00[EUR][1000 genomes] |
| rs6795986 | 1.00[EUR][1000 genomes] |
| rs6808209 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72921984 | 1.00[EUR][1000 genomes] |
| rs73845311 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845342 | 1.00[EUR][1000 genomes] |
| rs73845364 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845365 | 1.00[EUR][1000 genomes] |
| rs73845367 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73846847 | 1.00[EUR][1000 genomes] |
| rs73846849 | 1.00[EUR][1000 genomes] |
| rs73846852 | 1.00[EUR][1000 genomes] |
| rs73847508 | 1.00[EUR][1000 genomes] |
| rs73847513 | 1.00[EUR][1000 genomes] |
| rs73847530 | 1.00[EUR][1000 genomes] |
| rs7614125 | 1.00[EUR][1000 genomes] |
| rs7625197 | 1.00[EUR][1000 genomes] |
| rs7636797 | 1.00[EUR][1000 genomes] |
| rs7650730 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916330 | chr3:88083580-88884125 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:88591000-88591600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 2 | chr3:88591000-88592200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
