Variant report
| Variant | rs73845367 |
|---|---|
| Chromosome Location | chr3:88645762-88645763 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr3:88645669-88645869 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | FOS | chr3:88645733-88645924 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | MAFK | chr3:88645643-88645884 | HepG2 | liver: | n/a | chr3:88645792-88645801 chr3:88645791-88645801 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| NDUFA5P5 | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs2088206 | 1.00[EUR][1000 genomes] |
| rs59235641 | 1.00[EUR][1000 genomes] |
| rs59539646 | 1.00[EUR][1000 genomes] |
| rs59780992 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60830237 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6551363 | 1.00[EUR][1000 genomes] |
| rs6551364 | 1.00[EUR][1000 genomes] |
| rs6762401 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6808209 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72921984 | 1.00[EUR][1000 genomes] |
| rs73845311 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845342 | 1.00[EUR][1000 genomes] |
| rs73845364 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845365 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73846847 | 1.00[EUR][1000 genomes] |
| rs73846849 | 1.00[EUR][1000 genomes] |
| rs73846852 | 1.00[EUR][1000 genomes] |
| rs73847508 | 1.00[EUR][1000 genomes] |
| rs73847513 | 1.00[EUR][1000 genomes] |
| rs73847530 | 1.00[EUR][1000 genomes] |
| rs7611436 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7625197 | 1.00[EUR][1000 genomes] |
| rs7650730 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916330 | chr3:88083580-88884125 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv3906 | chr3:88609226-88654550 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014703 | chr3:88623532-88733631 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:88644600-88646000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 2 | chr3:88645000-88646400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
