Variant report

Variant	rs6762401
Chromosome Location	chr3:88666742-88666743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2088206	1.00[EUR][1000 genomes]
rs59539646	1.00[EUR][1000 genomes]
rs59780992	1.00[EUR][1000 genomes]
rs60830237	1.00[EUR][1000 genomes]
rs6551363	1.00[EUR][1000 genomes]
rs6551364	1.00[EUR][1000 genomes]
rs6808209	1.00[EUR][1000 genomes]
rs72921984	1.00[EUR][1000 genomes]
rs73845311	1.00[EUR][1000 genomes]
rs73845342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845364	1.00[EUR][1000 genomes]
rs73845365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845367	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73847508	1.00[EUR][1000 genomes]
rs73847513	1.00[EUR][1000 genomes]
rs73847530	1.00[EUR][1000 genomes]
rs7611436	1.00[EUR][1000 genomes]
rs7625197	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1014703	chr3:88623532-88733631	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88664600-88667800	Enhancers	Fetal Brain Female	brain
2	chr3:88665400-88667600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:88666000-88669000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:88666200-88667400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:88666400-88666800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:88666400-88666800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:88666600-88667000	Weak transcription	Fetal Brain Male	brain
8	chr3:88666600-88668000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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