Variant report

Variant	rs73845364
Chromosome Location	chr3:88638071-88638072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2088206	1.00[EUR][1000 genomes]
rs55798739	0.80[AFR][1000 genomes]
rs59235641	1.00[EUR][1000 genomes]
rs59539646	1.00[EUR][1000 genomes]
rs59780992	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60830237	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6551363	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6551364	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6762401	1.00[EUR][1000 genomes]
rs6808209	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72921984	1.00[EUR][1000 genomes]
rs73845280	0.80[AFR][1000 genomes]
rs73845311	1.00[EUR][1000 genomes]
rs73845342	1.00[EUR][1000 genomes]
rs73845365	1.00[EUR][1000 genomes]
rs73845367	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73846847	1.00[EUR][1000 genomes]
rs73846849	1.00[EUR][1000 genomes]
rs73846852	1.00[EUR][1000 genomes]
rs73847508	1.00[EUR][1000 genomes]
rs73847513	1.00[EUR][1000 genomes]
rs73847530	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7611436	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7625197	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7650730	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv3906	chr3:88609226-88654550	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1014703	chr3:88623532-88733631	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88637400-88638600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:88637800-88640000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:88637800-88640000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:88638000-88638600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:88638000-88639600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:88638000-88640000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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