Variant report

Variant	rs72928895
Chromosome Location	chr11:65756518-65756519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr11:65756431-65756762	K562	blood:	n/a	n/a
2	IRF4	chr11:65756334-65756882	GM12878	blood:	n/a	n/a
3	E2F4	chr11:65756518-65756869	MCF10A-Er-Src	breast:	n/a	n/a
4	RAD21	chr11:65756245-65757183	HCT-116	colon:	n/a	chr11:65756594-65756613 chr11:65756911-65756920 chr11:65756902-65756921
5	RFX5	chr11:65756453-65756730	HepG2	liver:	n/a	n/a
6	CTCF	chr11:65756454-65756819	LNCaP	prostate:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614
7	CTCF	chr11:65756492-65756989	GM10248	blood:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614 chr11:65756899-65756920
8	CTCF	chr11:65756359-65756830	ECC-1	luminal epithelium:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614
9	MYC	chr11:65756429-65756797	K562	blood:	n/a	n/a
10	SIN3AK20	chr11:65756282-65756986	A549	lung:	n/a	n/a
11	MYC	chr11:65756441-65756886	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chr11:65756392-65756917	SK-N-SH_RA	brain:	n/a	chr11:65756594-65756613
13	FOXA2	chr11:65756480-65756853	A549	lung:	n/a	n/a
14	POLR2A	chr11:65756354-65756947	PANC-1	pancreas:	n/a	n/a
15	CTCF	chr11:65756480-65756630	HAc	cerebellar:	n/a	chr11:65756591-65756612 chr11:65756596-65756614
16	RAD21	chr11:65756212-65757261	SK-N-SH	brain:	n/a	chr11:65756594-65756613 chr11:65756911-65756920 chr11:65756902-65756921
17	CTCF	chr11:65756264-65757239	K562	blood:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614 chr11:65756899-65756920
18	MYC	chr11:65756423-65756843	NB4	blood:	n/a	n/a
19	ARID3A	chr11:65756477-65756934	HepG2	liver:	n/a	n/a
20	SPI1	chr11:65756334-65756794	GM12891	blood:	n/a	n/a
21	GTF2F1	chr11:65756479-65756679	K562	blood:	n/a	n/a
22	RCOR1	chr11:65756422-65756785	K562	blood:	n/a	n/a
23	CTCF	chr11:65756427-65756910	SK-N-SH_RA	brain:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614
24	ZNF143	chr11:65756428-65756863	GM12878	blood:	n/a	n/a
25	ELF1	chr11:65756390-65756832	A549	lung:	n/a	n/a
26	CTCF	chr11:65756360-65757025	A549	lung:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614 chr11:65756899-65756920
27	CTCF	chr11:65756300-65757093	HepG2	liver:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614 chr11:65756899-65756920
28	RUNX3	chr11:65756281-65756854	GM12878	blood:	n/a	n/a
29	TBL1XR1	chr11:65756467-65756789	GM12878	blood:	n/a	n/a
30	RAD21	chr11:65756285-65756914	H1-hESC	embryonic stem cell:	n/a	chr11:65756594-65756613
31	CTCF	chr11:65756378-65757076	K562	blood:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614 chr11:65756899-65756920
32	CBX3	chr11:65756411-65756832	K562	blood:	n/a	n/a
33	PAX5	chr11:65756430-65756726	GM12878	blood:	n/a	n/a
34	CTCF	chr11:65756500-65756770	A549	lung:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614
35	TEAD4	chr11:65756318-65756837	K562	blood:	n/a	n/a
36	POLR2A	chr11:65756234-65756899	U87	brain:	n/a	n/a
37	RAD21	chr11:65756379-65756973	GM12878	blood:	n/a	chr11:65756594-65756613 chr11:65756911-65756920 chr11:65756902-65756921
38	RAD21	chr11:65756417-65757010	K562	blood:	n/a	chr11:65756594-65756613 chr11:65756911-65756920 chr11:65756902-65756921
39	CTCF	chr11:65756361-65757021	T-47D	breast:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614 chr11:65756899-65756920
40	RCOR1	chr11:65756413-65756787	K562	blood:	n/a	n/a
41	SPI1	chr11:65756444-65756724	K562	blood:	n/a	n/a
42	MYC	chr11:65756504-65756925	MCF10A-Er-Src	breast:	n/a	n/a
43	RAD21	chr11:65756408-65757005	A549	lung:	n/a	chr11:65756594-65756613 chr11:65756911-65756920 chr11:65756902-65756921
44	CTCF	chr11:65756500-65756650	NHLF	lung:	n/a	chr11:65756591-65756612 chr11:65756596-65756614
45	ELF1	chr11:65756327-65756956	GM12878	blood:	n/a	n/a
46	CTCF	chr11:65756501-65756774	GM13976	blood:	n/a	chr11:65756670-65756688 chr11:65756591-65756612 chr11:65756596-65756614
47	RAD21	chr11:65756332-65757075	MCF-7	breast:	n/a	chr11:65756594-65756613 chr11:65756911-65756920 chr11:65756902-65756921
48	POLR2A	chr11:65756396-65756766	HCT-116	colon:	n/a	n/a
49	JUND	chr11:65756480-65756832	K562	blood:	n/a	n/a
50	MAX	chr11:65756380-65756742	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:65755441..65758001-chr11:65788479..65791196,3	MCF-7	breast:
2	chr11:65479793..65481375-chr11:65755148..65758058,2	MCF-7	breast:
3	chr11:65755754..65758071-chr11:65759625..65762366,2	K562	blood:
4	chr11:65756144..65756853-chr20:52194927..52195545,2	MCF-7	breast:
5	chr11:65656308..65659356-chr11:65753544..65758296,4	MCF-7	breast:
6	chr11:65755321..65756861-chr11:65818363..65819978,2	K562	blood:
7	chr11:65748830..65750592-chr11:65753511..65756677,3	MCF-7	breast:
8	chr11:65666258..65667865-chr11:65755112..65756904,2	MCF-7	breast:
9	chr11:65730464..65733957-chr11:65754974..65756864,3	K562	blood:
10	chr11:65340985..65341960-chr11:65756204..65756794,2	MCF-7	breast:
11	chr11:65473358..65474072-chr11:65756238..65757000,2	K562	blood:
12	chr11:65756386..65757113-chr11:65788725..65789470,2	MCF-7	breast:
13	chr11:65755952..65758333-chr11:65769502..65771694,2	K562	blood:
14	chr11:65650789..65652579-chr11:65755118..65756858,3	MCF-7	breast:
15	chr11:65756379..65757093-chr11:65764476..65765013,2	K562	blood:
16	chr11:65727996..65732131-chr11:65753482..65756535,4	MCF-7	breast:
17	chr11:65755347..65758083-chr11:65763733..65766415,2	K562	blood:
18	chr11:65656283..65659503-chr11:65753735..65758197,4	MCF-7	breast:
19	chr11:65651900..65652622-chr11:65756310..65757142,3	MCF-7	breast:
20	chr11:65657901..65658652-chr11:65756432..65756981,2	MCF-7	breast:
21	chr11:65623146..65626071-chr11:65754997..65756821,2	MCF-7	breast:
22	chr11:65684400..65687504-chr11:65755771..65760818,5	MCF-7	breast:
23	chr11:65655562..65656894-chr11:65756119..65757062,6	K562	blood:
24	chr11:65650315..65653503-chr11:65755193..65756867,3	MCF-7	breast:
25	chr11:65756463..65757004-chr11:65812359..65813102,2	MCF-7	breast:
26	chr11:65478829..65479504-chr11:65756432..65757226,2	K562	blood:
27	chr11:65746618..65749014-chr11:65755089..65756613,2	K562	blood:
28	chr11:65651699..65652836-chr11:65756080..65757183,10	K562	blood:
29	chr11:65658665..65659179-chr11:65756310..65757056,2	MCF-7	breast:
30	chr11:65750202..65753113-chr11:65753459..65757175,5	K562	blood:
31	chr11:65655825..65656642-chr11:65756114..65757160,3	MCF-7	breast:
32	chr11:65755935..65759042-chr11:65762460..65765703,3	MCF-7	breast:
33	chr11:65478250..65480362-chr11:65755788..65758079,2	K562	blood:
34	chr11:65756329..65757223-chr11:65812247..65813206,3	MCF-7	breast:
35	chr11:65756240..65757374-chr11:65789632..65790577,5	MCF-7	breast:
36	chr11:65477746..65479665-chr11:65755090..65756888,2	K562	blood:
37	chr11:65584486..65587354-chr11:65754171..65756928,3	K562	blood:
38	chr11:65655713..65656624-chr11:65755929..65756524,2	MCF-7	breast:
39	chr11:65756158..65757092-chr11:65835112..65836021,4	MCF-7	breast:
40	chr11:65585541..65586336-chr11:65756122..65757117,6	K562	blood:
41	chr11:65754920..65762066-chr11:65768032..65772490,9	K562	blood:
42	chr11:65478565..65481119-chr11:65754473..65758091,4	MCF-7	breast:
43	chr11:65651813..65653237-chr11:65755840..65757419,8	MCF-7	breast:
44	chr11:65653330..65654339-chr11:65756345..65756872,3	MCF-7	breast:
45	chr11:65756138..65757491-chr11:65789561..65790625,11	MCF-7	breast:
46	chr11:65585441..65586341-chr11:65756284..65757099,4	MCF-7	breast:
47	chr11:65511713..65512488-chr11:65756361..65757355,2	MCF-7	breast:
48	chr11:65743772..65746115-chr11:65755090..65757829,2	K562	blood:
49	chr11:65742158..65748813-chr11:65749011..65756801,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254867	TF binding region
ENSG00000087365	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000175294	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000175229	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000254867	Chromatin interaction
ENSG00000172732	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12574568	0.85[EUR][1000 genomes]
rs12576095	0.85[EUR][1000 genomes]
rs12577165	0.85[EUR][1000 genomes]
rs2276017	0.85[EUR][1000 genomes]
rs2277305	0.85[EUR][1000 genomes]
rs3825068	0.85[EUR][1000 genomes]
rs59156593	1.00[AMR][1000 genomes]
rs59768626	1.00[AMR][1000 genomes]
rs72926862	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72926898	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72928826	1.00[AMR][1000 genomes]
rs72928851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72928854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72928868	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72928884	0.85[EUR][1000 genomes]
rs72928892	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928898	0.85[EUR][1000 genomes]
rs72928900	0.85[EUR][1000 genomes]
rs72930912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930914	0.85[EUR][1000 genomes]
rs72930933	0.85[EUR][1000 genomes]
rs72930942	0.85[EUR][1000 genomes]
rs72930945	0.81[EUR][1000 genomes]
rs72930951	0.85[EUR][1000 genomes]
rs72930952	0.85[EUR][1000 genomes]
rs72930956	0.85[EUR][1000 genomes]
rs72930958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930964	0.85[EUR][1000 genomes]
rs72930967	0.85[EUR][1000 genomes]
rs72930974	0.85[EUR][1000 genomes]
rs72930976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930985	0.90[EUR][1000 genomes]
rs73496466	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
3	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
5	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
6	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
7	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
8	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65730600-65767800	Weak transcription	Right Atrium	heart
2	chr11:65735800-65756600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:65736400-65767400	Weak transcription	Psoas Muscle	Psoas
4	chr11:65737800-65756600	Weak transcription	Stomach Mucosa	stomach
5	chr11:65741200-65765000	Weak transcription	NHDF-Ad	bronchial
6	chr11:65741400-65762000	Weak transcription	HSMMtube	muscle
7	chr11:65741600-65762000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:65742200-65759800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:65743800-65764800	Weak transcription	HSMM	muscle
10	chr11:65745000-65764200	Weak transcription	HUVEC	blood vessel
11	chr11:65745200-65764800	Weak transcription	K562	blood
12	chr11:65745400-65764800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:65745400-65765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:65745600-65764200	Weak transcription	NH-A	brain
15	chr11:65745800-65756600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:65745800-65764800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:65746000-65764600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:65746800-65765000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:65747000-65764200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:65747000-65764600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:65747000-65764600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:65747000-65764600	Weak transcription	Ovary	ovary
23	chr11:65747000-65764800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:65747200-65756600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:65747200-65757200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:65747200-65759800	Weak transcription	Lung	lung
27	chr11:65747200-65764200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:65747200-65764200	Weak transcription	Adipose Nuclei	Adipose
29	chr11:65747200-65764200	Weak transcription	Liver	Liver
30	chr11:65747200-65764200	Weak transcription	A549	lung
31	chr11:65747200-65764400	Weak transcription	Left Ventricle	heart
32	chr11:65747200-65764600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:65747200-65764600	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:65747200-65764800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:65747200-65764800	Weak transcription	Pancreas	Pancrea
36	chr11:65747200-65764800	Weak transcription	Small Intestine	intestine
37	chr11:65747400-65756600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:65747400-65756600	Weak transcription	NHEK	skin
39	chr11:65747400-65763000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:65747400-65763800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:65747400-65764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:65747400-65764200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:65747400-65764800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:65747400-65764800	Weak transcription	Fetal Lung	lung
45	chr11:65747400-65765200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr11:65747600-65756600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:65747600-65764200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:65747600-65764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:65747600-65764800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:65747600-65765000	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links